Streptococcus pyogenes
Streptococcus pyogenes (Group A Strep) strains are associated with a wide variety of clinical manifestations, including streptococcal toxic-shock syndrome, acute rheumatic fever, scarlet fever, and others.
Data Downloads
The Sanger Institute has completed the sequencing of and published the 1.84 Mb genome of Streptococcus pyogenes strain Manfredo (M5), in collaboration with Prof. Mike Kehoe, of the School of Cell and Molecular Biosciences, University of Newcastle. The strain chosen for this project is associated with acute rheumatic fever, and was isolated from a patient in Chicago in the late 1950's.
Published Genome Data
The fully annotated genome has been deposited in the EMBL/GenBank databases with accession number AM295007.
Shotgun and assembly data from this project are available from our ftp site.
BSAC Resistance Surveillance Project
This data is from bacterial isolates collected in the BSAC Resistance Surveillance Project. Please see bsacsurv.org for details and availability.
Studies
- Discovery of sequence diversity in Streptococcus pyogenes transmission study
- Streptococcus pyogenes genome architecture
- Streptococcus pyogenes (GAS strains) diversity
- Genome diversity of spatially distinct Streptococcus agalactiae
- Genomic and transcriptomic characterisation of Streptococcus pyogenes emm12 strains from the 2011 Hong Kong scarlet fever outbreak
- Comparative RNA-seq analysis of three bacterial species
- Streptococcus pyogenes isolates from Fiji
- Staphylococcus aureus lineages from the Indian subcontinent: emergence and global transmission
- Streptococcus pyogenes infections among children admitted to Kilifi District Hospital
- 100 Year Genomic Evolution of M1 strains of Streptococcus pyogenes
- Streptococcus pyogenes group A sequencing
- NCTC 3000
- PacBio sequencing of Streptococcus spp.
- Bloodstream surveillence across Africas
- Genomic analysis of Streptococcus pyogenes strains
- GAS Vaccinology: Capturing Global Vaccine Antigen Diversity
Discovery of sequence diversity in Streptococcus pyogenes transmission study
Sample | Strain | Run Accession |
---|---|---|
H578 | H578 | ERR023360 |
H588 | H588 | ERR023364 |
H589 | H589 | ERR023365 |
H590 | H590 | ERR023366 |
H579 | H579 | ERR023367 |
H581 | H581 | ERR023368 |
H582 | H582 | ERR023369 |
H583 | H583 | ERR023370 |
H584 | H584 | ERR023371 |
H585 | H585 | ERR023361 |
H586 | H586 | ERR023362 |
H587 | H587 | ERR023363 |
H592 | H592 | ERR019749 |
H592 | H592 | ERR028383 |
H592 | H592 | ERR027362 |
H608 | H608 | ERR019753 |
H608 | H608 | ERR027366 |
H608 | H608 | ERR028387 |
H609 | H609 | ERR019754 |
H609 | H609 | ERR028388 |
H609 | H609 | ERR027367 |
H739 | H739 | ERR019755 |
H739 | H739 | ERR028389 |
H739 | H739 | ERR027368 |
H597 | H597 | ERR019756 |
H597 | H597 | ERR027369 |
H597 | H597 | ERR028390 |
H598 | H598 | ERR019757 |
H598 | H598 | ERR027370 |
H598 | H598 | ERR028391 |
H602 | H602 | ERR019758 |
H602 | H602 | ERR027371 |
H602 | H602 | ERR028392 |
H603 | H603 | ERR019759 |
H603 | H603 | ERR027372 |
H603 | H603 | ERR028393 |
H604 | H604 | ERR019760 |
H604 | H604 | ERR028394 |
H604 | H604 | ERR027373 |
H605 | H605 | ERR019750 |
H605 | H605 | ERR028384 |
H605 | H605 | ERR027363 |
H606 | H606 | ERR019751 |
H606 | H606 | ERR027364 |
H606 | H606 | ERR028385 |
H607 | H607 | ERR019752 |
H607 | H607 | ERR028386 |
H607 | H607 | ERR027365 |
Streptococcus pyogenes genome architecture
Streptococcus pyogenes (GAS strains) diversity
Genomic and transcriptomic characterisation of Streptococcus pyogenes emm12 strains from the 2011 Hong Kong scarlet fever outbreak
Streptococcus pyogenes isolates from Fiji
Staphylococcus aureus lineages from the Indian subcontinent: emergence and global transmission
Sample | Strain | Run Accession |
---|---|---|
2329STDY5437889 | Unknown | ERR279001 |
2329STDY5437888 | Unknown | ERR279000 |
2329STDY5437887 | Unknown | ERR278999 |
2329STDY5437886 | Unknown | ERR278998 |
2329STDY5437885 | Unknown | ERR278997 |
2329STDY5437884 | Unknown | ERR278996 |
2329STDY5437883 | Unknown | ERR278995 |
2329STDY5437882 | Unknown | ERR278994 |
2329STDY5437881 | Unknown | ERR278993 |
2329STDY5437880 | Unknown | ERR278992 |
2329STDY5437879 | Unknown | ERR278991 |
2329STDY5437878 | Unknown | ERR278990 |
2329STDY5437877 | Unknown | ERR278989 |
2329STDY5437876 | Unknown | ERR278988 |
2329STDY5437875 | Unknown | ERR278987 |
2329STDY5437874 | Unknown | ERR278986 |
2329STDY5437873 | Unknown | ERR278985 |
2329STDY5437872 | Unknown | ERR278984 |
2329STDY5437871 | Unknown | ERR278983 |
2329STDY5437870 | Unknown | ERR278982 |
2329STDY5437869 | Unknown | ERR278981 |
2329STDY5437868 | Unknown | ERR278980 |
2329STDY5437867 | Unknown | ERR278979 |
2329STDY5437866 | Unknown | ERR278978 |
Streptococcus pyogenes infections among children admitted to Kilifi District Hospital
100 Year Genomic Evolution of M1 strains of Streptococcus pyogenes
Streptococcus pyogenes group A sequencing
NCTC 3000
PacBio sequencing of Streptococcus spp.
Sample | Strain | Run Accession |
---|---|---|
3095STDY5812325 | Unknown | ERR581128 |
3095STDY5812325 | Unknown | ERR581130 |
3095STDY5834398 | Unknown | ERR581131 |
3095STDY5834399 | Unknown | ERR581132 |
3095STDY5834400 | Unknown | ERR581133 |
3095STDY5834401 | Unknown | ERR581134 |
3095STDY5834402 | Unknown | ERR581135 |
3095STDY5834403 | Unknown | ERR581136 |
3095STDY5834404 | Unknown | ERR581137 |
3095STDY5834405 | Unknown | ERR581138 |
Bibliography
-
Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo.
Journal of bacteriology 2006;189;4;1473-7
PUBMED: 17012393; PMC: 1797351; DOI: 10.1128/JB.01227-06
Related links
Data Use Statement
This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.
Sequencing enquiries
Please address all sequencing enquiries to: pathinfo@sanger.ac.uk