SeroBA

A k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.

SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.

Downloads

Please see our GitHub page for download and installation instructions.

Further information

Learn and support

For more information and advice on using this software please see our GitHub page.

License and Citation

SeroBA is available under GPL3.

If you make use of this software in your research, please cite as:

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data
Epping L, van Tonder, AJ, Gladstone RA, GPS Consortium, Bentley SD, Page AJ, Keane JA,
Microbial Genomics 2018; doi: 10.1099/mgen.0.000186