scmap

A tool for unsupervised projection of single cell RNA-seq data.

Single-cell RNA-seq (scRNA-seq) is widely used to investigate the composition of complex tissues since the technology allows researchers to define cell-types using unsupervised clustering of the transcriptome. However, due to differences in experimental methods and computational analyses, it is often challenging to directly compare the cells identified in two different experiments. scmap is a method for projecting cells from a scRNA-seq experiment on to the cell-types or individual cells identified in a different experiment.

Launch Application

Further information

All of the source code is available under the GNU GPL-3 open source license.

Contact

If you need help or have any queries, please contact us using the details below.


Sanger Institute Contributors

Photo of Dr Martin Hemberg, PhD

Dr Martin Hemberg, PhD

CDF Group Leader

Photo of Dr Vladimir Kiselev

Dr Vladimir Kiselev

Cellular Genetics Informatics Team Leader