SNP-o-matic

SNP-o-matic is a fast, stringent short-read mapping software.

It supports a multitude of output types and formats, for uses in filtering reads, alignments, sequence-based genotyping calls, assisted reassembly of contigs etc.

Downloads

Code is on GitHub.

Further information

License is GPL V3+


Sanger Institute Contributors

Photo of Dr Magnus Manske

Dr Magnus Manske

Senior Staff Scientist