SaffronTree

A software application for fast, reference-free pseudo-phylogenomic trees from reads or contigs.

Quickly build a tree directly from raw reads or from assembled sequences, without the need for a reference sequence or de novo assemblies.

Further information

For more information and advice on using this software please see our GitHub page

SaffronTree is available under GPL3.

If you make use of this software in your research, please cite as:

“SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs”, Andrew J. Page, Martin Hunt, Torsten Seemann and Jacqueline A. Keane. The Journal of Open Source Software, 2(13), 2017. http://joss.theoj.org/papers/10.21105/joss.00243

Contact

If you need help or have any queries, please contact us using the details below.

If you need help or have any queries, please contact us using the details below.

Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.


Sanger Institute Contributors

Previous contributors

Photo of Dr Andrew Page

Dr Andrew Page

Principal Computer Programmer