Snoopy

Browser based quality control tool to expedite reviewing predicted variants in next generation sequencing files.

Snoopy is a browser-based quality control tool that allows the user to quickly visually review many batches of predicted variants from sequence files (BAM/CRAM). The steps of usage are:

  1. Construct a json file to list your sequence files (locally, HTTP/S, or SSH) and a set of variants sites
  2. Start snoopy from the command line
  3. In the browser load the json file
  4. Click 'variant', 'not variant', 'uncertain' at each predicted variant site
  5. Save the results which includes your decisions and a snapshot of each location

Further information

For more information see:

GNU GENERAL PUBLIC LICENSE Version 3

Contact

If you need help or have any queries, please contact us using the details below.


Sanger Institute Contributors

Previous contributors

Photo of Dan Rice

Dan Rice

Senior Software Developer

Photo of Dr Jeffrey Barrett

Dr Jeffrey Barrett

Former Director of Open Targets & Former Senior Group Leader