AmpRecon
Malaria amplicon-sequencing analysis
Nextflow pipeline for the analysis of malaria amplicon sequencing data
AmpRecon is a bioinformatics pipeline that aligns short-read sequencing data to specific amplicon panels, performs variant-calling, and produces genetic report cards. It was designed to work with amplicon-sequencing data from Plasmodium falciparum and Plasmodium vivax.
Sanger Institute Contributors
Bruhad Dave
Bioinformatician
Katherine Figueroa
Principal Bioinformatician
Dr Matthew Forbes
Principal Bioinformatician
Andrea Frick-Kretschmer
Senior Bioinformatician
Dr Kevin Howe
Head of Data Analysis and Engineering
Tom Maddison
Bioinformatician
Dr Frank Schwach
Principal Bioinformatician
Mr Simon Suddaby
Bioinformatician
Dr Antonio Marinho da Silva Neto
Senior Bioinformatician
Wellcome Sanger Institute