SNP-sites

Finds SNP sites from a multi-FASTA alignment file.

A software application for rapidly extracting SNPs from a multi-FASTA alignment.

Further information

For more information and advice on using this software please see our GitHub page.

SNP-sites is available under GPL3.

If you make use of this software in your research, please cite as:

“SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments”, Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris, Microbial Genomics 2(4), (2016)

Contact

If you need help or have any queries, please contact us using the details below.

If you need help or have any queries, please contact us using the details below.

Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.


Sanger Institute Contributors

Previous contributors

Photo of Dr Simon Harris

Dr Simon Harris

Senior Staff Scientist

Photo of Dr Andrew Page

Dr Andrew Page

Principal Computer Programmer