Shigella dysenteriae

Data Downloads

FTP site

BLAST server

The Sanger Institute was funded to perform comparative sequencing of five Escherichia coli and Shigella strains in collaboration with Dr. Christoph Tang of the Centre for Molecular Microbiology and Infection, Imperial College, London, Prof. Mark Pallen and Dr. Ian Henderson of the Division of Immunity and Infection, University of Birmingham, UK Dr. Claude Parsot and Dr. Phillipe Sansonetti of the Unite de Pathologie Microbienne, Institut Pasteur, France, Dr. Gadi Frankel, of the Department of Biochemistry, Imperial College, London, and Dr. Stuart Knutton of the Institute of Child Health, Birmingham.

These strains included Shigella dysenteriae M131649 (M131). This project is still in finishing/gap closure.

Published Genome Data

Studies

Global diversity of Shigella species

Sample	Strain	Run Accession
sh1324	Ra-236	ERR212304
sh1323	K-9363	ERR212303
sh1322	K-9391	ERR212302
sh1321	K-10870	ERR212301
sh1320	K-8461	ERR212300
sh1319	K-10335	ERR212299
sh1318	K-10312	ERR212298
sh1317	KH-1939	ERR212297
sh1316	As-15382	ERR212296
sh1315	K-1141	ERR212295
sh1314	K-243	ERR212294
sh1313	K-10336	ERR212293
sh1312	K-11155	ERR212292
sh1311	K-1151	ERR212291
sh1310	K-10872	ERR212290
sh1309	K-9194	ERR212289
sh1308	K-9421	ERR212288
sh1307	K-9503	ERR212287
sh1306	K-9390	ERR212286
sh1291	KH-3146	ERR212271
sh1346	K-8452	ERR212326
sh1345	K-8463	ERR212325
sh1344	K-8186	ERR212324
sh1343	K-8375	ERR212323
sh1342	K-8437	ERR212322
sh1341	K-8438	ERR212321
sh1340	K-8309	ERR212320
sh1339	K-8461	ERR212319
sh1338	K-8571	ERR212318
sh1337	K-8275	ERR212317
sh1336	K-8374	ERR212316
sh1335	K-7978	ERR212315
sh1334	729	ERR212314
sh1333	511	ERR212313
sh1332	K-10689	ERR212312
sh1331	K-10230	ERR212311
sh1330	K-10688	ERR212310
sh1329	K-10685	ERR212309
sh1328	K-10871	ERR212308
sh1327	K-9420	ERR212307
sh1326	K-9392	ERR212306
sh1325	HUS-137	ERR212305
sh1305	K-10279	ERR212285
sh1304	KH-526	ERR212284
sh1303	KH-947	ERR212283
sh1302	As-15878	ERR212282
sh1301	As-15858	ERR212281
sh1300	K-1613	ERR212280
sh1299	Y 564/90	ERR212279
sh1298	Y 129/92	ERR212278
sh1297	KH-699	ERR212277
sh1296	B.C-3355	ERR212276
sh1295	KH-832	ERR212275
sh1294	KH-2960	ERR212274
sh1293	23 SLO	ERR212273
sh1292	KH-1719	ERR212272

Phylogeography of Shigella spp. in Southeast Asia

Sample	Strain	Run Accession
2927STDY5808902	Unknown	ERR592282

Unable to read file: /resources/downloads/bacteria/inc/shigella-dysenteriae3012.inc

Evolution and adaptation of the epidemic dysentery bacterium Shigella dysenteriae type 1 (Shiga’s bacillus) during the pre and post-antibiotic era

Sample	Strain	Run Accession
3426STDY6019006	CDC ZB4	ERR852664
3426STDY6019014	17-89	ERR863054
3426STDY6019014	17-89	ERR871737
3426STDY6019014	17-89	ERR902082
3426STDY6019007	CDC 69-3818	ERR852665
3426STDY6019015	M116	ERR863055
3426STDY6019015	M116	ERR871738
3426STDY6019008	M115	ERR852666
3426STDY6019009	Sd197	ERR852667
3426STDY6019010	40-81	ERR863050
3426STDY6019011	CDC 87-8330	ERR863051
3426STDY6019011	CDC 87-8330	ERR871735
3426STDY6019012	CAR10=IPB01016014	ERR863052
3426STDY6019013	99-9324	ERR863053
3426STDY6019013	99-9324	ERR871736

Unable to read file: /resources/downloads/bacteria/inc/shigella-dysenteriae4269.inc

Unable to read file: /resources/downloads/bacteria/inc/shigella-dysenteriae4464.inc

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk