Ruminococcus

Ruminococcus is a genus of Gram positive, anaerobic bacteria usually found in the gut.

Species include Ruminococcus flavefaciens, found in the rumen and in the hindgut of monogastric domestic and wild mammals. These and other cellulolytic bacteria play an important role in the digestion of hemicellulose and cellulose plant cell walls. They possess "cellulosomes," which are surface structures anchored to the bacterial cell wall and consist of a scaffold to which attach several different carbohydrate binding modules possessing cellulase and hemicellulase activities (Bayer et al 2008 The Chemical Record 8: 364-377; Fontes and Gilbert 2010 Ann Rev Biochem 79:23.1-23.27). Ruminococcus flavefaciens strain 007C was isolated from the rumen of a cow (Stewart et al., J Appl Bacteriol 1990 68:349-56) and possesses a novel cell surface-anchored cellulose binding protein. (Rincon et al., J. Bacteriol 2007 Jul; 189(13):4774-83).

Data Downloads

The Ruminococcus flavefaciens strain 007C genome was sequenced in collaboration with Prof. Harry Flint of the Rowett Institute of Nutrition and Health, Aberdeen.

Studies

MetaHIT_KT01
SampleStrainRun Accession
2305_6230511_6ERR056961
2305_23230511_23ERR056963
2705_80270511_80ERR056974
2006_154200611_154ERR056983
2305_46230511_6ERR152450
Unable to read file: /resources/downloads/bacteria/inc/ruminococcus2789.inc
Unable to read file: /resources/downloads/bacteria/inc/ruminococcus3542.inc

Bibliography

  • Cellulosomes: highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates.

    Fontes CM and Gilbert HJ

    Annual review of biochemistry 2010;79;655-81

    PUBMED: 20373916; DOI: 10.1146/annurev-biochem-091208-085603

  • From cellulosomes to cellulosomics.

    Bayer EA, Lamed R, White BA and Flint HJ

    Chemical record (New York, N.Y.) 2008;8;6;364-77

    PUBMED: 19107866; DOI: 10.1002/tcr.20160

  • A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens.

    Rincon MT, Cepeljnik T, Martin JC, Barak Y, Lamed R, Bayer EA and Flint HJ

    Journal of bacteriology 2007;189;13;4774-83

    PUBMED: 17468247; PMC: 1913464; DOI: 10.1128/JB.00143-07

Related links

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

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