Sequence Analysis and Management (SAM)
We also submit raw sequencing data to the EBI on behalf of the research groups.
CRAM is a more highly compressed alternative to the BAM and SAM DNA sequence alignment file formats.
SAMtools / BCFtools / HTSlib
SAMtools, BCFtools. and HTSlib are tools for manipulating sequence alignment (SAM, BAM, CRAM) and variant call (VCF and BCF) files.
Scramble is a DNA sequencing file format conversion tool included as part of the Staden io_lib package.
High Performance Algorithm Group (HPAG)
Many high profile projects such as the Cancer Genome and 1000 Genomes projects need quality assemblies for downstream analysis using 2nd ...
New Pipeline Group (NPG)
The SAM team is responsible for archival of the data produced by NPG to external repositories, typically the EGA, ENA or ...
Sequence Variation Infrastructure
Collaborate on development of Samtools and maintenance of the sequencing data format specifications (SAM/BAM/CRAM/BCF/VCF).
We work with the following groups