New Pipeline Group (NPG)

DNA Pipelines Informatics

NPG is responsible for DNA Pipelines's production informatics analysis pipelines, Illumina sequencing QC tools and expertise, and internal archiving of data products.

The NPG team liaise with production teams and faculty informatics (the customer element directly using the product) to learn of desired features for processing and common best practices. Senior DNA Pipelines management pass to NPG expected changes in the nature of the product and demand e.g. new instruments, new instrument types and new projects with expected throughput and processing requirements.

From these, small requirements are considered and typically a solution proposed, provided and reviewed by a subset of the NPG team. Larger requirements are dealt with as projects. When appropriate we’ll contact Wellcome Sanger Institute Systems asking for advice, review, new services or enhancements.

NPG reviews continuously its systems with an eye to product trends and implements long rolling projects to accommodate them. e.g. adoption of BAM format based analysis pipelines (addressing provenance records in a multiple path analysis suite, and reducing IO) and increased data streaming between analysis tools (to reduce IO requirements, avoid the need for a high performance file-system, allow for an easily scalable system).

The NPG team has to maintain informatics, Illumina sequencing, and genotyping knowledge sufficient to anticipate and understand DNA Pipelines customer requirements so that requests can be anticipated, evaluated and rejected or implemented appropriately.

Core team

Photo of Carol Scott

Carol Scott

Principal Bioinformatician

Photo of Mr Sendu Bala

Mr Sendu Bala

Senior Software Developer

Photo of Dr Irina Abnizova

Dr Irina Abnizova

Senior Computer Biologist

Photo of Jillian Durham

Jillian Durham

Senior Bioinformatician

Photo of Jennifer Liddle

Jennifer Liddle

Senior Software Developer

Photo of Dr Jaime M. Tovar Corona

Dr Jaime M. Tovar Corona

Senior Software Developer

Previous team members

Photo of Dr Iain Bancarz

Dr Iain Bancarz

Senior Software Developer

Photo of Ruben Eduardo Bautista Garcia

Ruben Eduardo Bautista Garcia

Senior Bioinformatician

Related groups

Partners

We work with the following groups

External

Illumina

Illumina provides the main technology for sequencing and array services provided by DNA Pipelines.