A software application for fast, reference-free pseudo-phylogenomic trees from reads or contigs.

Download and Installation

Please see our GitHub page for download and installation instructions.

Learn and Support

For more information and advice on using this software please see our GitHub page

License and Citation

SaffronTree is available under GPL3.

If you make use of this software in your research, please cite as:

"SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs", Andrew J. Page, Martin Hunt, Torsten Seemann and Jacqueline A. Keane. The Journal of Open Source Software, 2(13), 2017.


If you need help or have any queries, please contact us using the details below.

Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.


Sanger Contributors

Tool Type