A software application for fast, reference-free pseudo-phylogenomic trees from reads or contigs.
Download and Installation
Please see our GitHub page for download and installation instructions.
Learn and Support
For more information and advice on using this software please see our GitHub page
License and Citation
SaffronTree is available under GPL3.
If you make use of this software in your research, please cite as:
"SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs", Andrew J. Page, Martin Hunt, Torsten Seemann and Jacqueline A. Keane. The Journal of Open Source Software, 2(13), 2017. http://joss.theoj.org/papers/10.21105/joss.00243
If you need help or have any queries, please contact us using the details below.
The Pathogen Informatics team develop and maintain software applications and systems to support the research activities of the Parasites and Microbes programme. We develop and maintain scalable and robust automated tools for sequence and annotation tracking and analysis and provide ad-hoc informatics support and training to the researchers in the programme.