Elisabetta Galatola

Senior Software Developer

 
Elisabetta joined the PaM Informatics team as a Bioinformatics Support Engineer in late 2021, to support research activities of the Parasite and Microbes Programme.

About

Elisabetta is a Senior Software Developer and Project Owner with a background in Applied Bioinformatics and (Cellular and Molecular) Biology. She supports research activities of the Parasites and Microbes (PaM) programme by troubleshooting bioinformatics issues, developing PaM Informatics tools and leading agile teams to delivery.

Software Development

Elisabetta started working as a Software Developer within the PaM Informatics team in 2022, contributing to several projects focused on sharing and monitoring genomic data.

Monocle

Monocle is a web application intended for monitoring and sharing genomic data.

  • Monocle Status Monitor – restricted access. Intended for sharing private/unpublished data with collaborators. Collaborators are able to track the status (received/sequenced/pipelines) of their samples and download their data once ready (reads, assemblies, and annotations).
  • Monocle Data Viewer – open access. Intended for sharing public data with the rest of the scientific community. Users are able to download assemblies and annotations by filtering and sorting samples of interest.

 

Tracking system for genomic data

Elisabetta is involved in the development and ownership of PaM projects such as Shelf – a user-friendly, microservices-based platform designed for data management. Shelf features a powerful command-line interface (CLI) that enables users to query PaM data by study (import), sample, run, and file metadata, supporting streamlined and flexible data access.

My timeline

 
Wellcome Sanger Institute

Programmes and Facilities

 

Programme

Parasites and Microbes

We are a global research hub, using genomics to understand how bacteria, viruses, parasites, global travel, climate change and healthcare combine ...