Dr Nitin Kumar | Senior Bioinformatician

Kumar, Nitin

Publications

  • A human gut bacterial genome and culture collection for improved metagenomic analyses.

    Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E et al.

    Nature biotechnology 2019;37;2;186-192

  • Culturing of female bladder bacteria reveals an interconnected urogenital microbiota.

    Thomas-White K, Forster SC, Kumar N, Van Kuiken M, Putonti C et al.

    Nature communications 2018;9;1;1557

  • Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans.

    Knetsch CW, Kumar N, Forster SC, Connor TR, Browne HP et al.

    Journal of clinical microbiology 2018;56;3

  • Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation.

    Browne HP, Forster SC, Anonye BO, Kumar N, Neville BA et al.

    Nature 2016;533;7604;543-546

  • Identification and validation of two peptide markers for the recognition of Clostridioides difficile MLST-1 and MLST-11 by MALDI-MS.

    Corver J, Sen J, Hornung BVH, Mertens BJ, Berssenbrugge EKL et al.

    Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2019;25;7;904.e1-904.e7

  • A human gut bacterial genome and culture collection for improved metagenomic analyses.

    Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E et al.

    Nature biotechnology 2019;37;2;186-192

  • Surveying what's flushed away.

    Iraola G and Kumar N

    Nature reviews. Microbiology 2018;16;8;456

  • Proteomic identification of Axc, a novel beta-lactamase with carbapenemase activity in a meropenem-resistant clinical isolate of Achromobacter xylosoxidans.

    Fleurbaaij F, Henneman AA, Corver J, Knetsch CW, Smits WK et al.

    Scientific reports 2018;8;1;8181

  • Culturing of female bladder bacteria reveals an interconnected urogenital microbiota.

    Thomas-White K, Forster SC, Kumar N, Van Kuiken M, Putonti C et al.

    Nature communications 2018;9;1;1557

  • Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans.

    Knetsch CW, Kumar N, Forster SC, Connor TR, Browne HP et al.

    Journal of clinical microbiology 2018;56;3

  • DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome.

    Howell KJ, Kraiczy J, Nayak KM, Gasparetto M, Ross A et al.

    Gastroenterology 2018;154;3;585-598

  • Genome watch: Microbial diversity knows no borders.

    Pike LJ, Viciani E and Kumar N

    Nature reviews. Microbiology 2018;16;2;66

  • Genome watch: Microbiota shuns the modern world.

    Kumar N and Forster SC

    Nature reviews. Microbiology 2017;15;12;710

  • Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota.

    Iraola G, Forster SC, Kumar N, Lehours P, Bekal S et al.

    Nature communications 2017;8;1;1367

  • Whole genome sequencing of emerging multidrug resistant Candida auris isolates in India demonstrates low genetic variation.

    Sharma C, Kumar N, Pandey R, Meis JF and Chowdhary A

    New microbes and new infections 2016;13;77-82

  • Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation.

    Browne HP, Forster SC, Anonye BO, Kumar N, Neville BA et al.

    Nature 2016;533;7604;543-546

  • Genome-Based Infection Tracking Reveals Dynamics of Clostridium difficile Transmission and Disease Recurrence.

    Kumar N, Miyajima F, He M, Roberts P, Swale A et al.

    Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016;62;6;746-752

  • Lymphoid-Tissue-Resident Commensal Bacteria Promote Members of the IL-10 Cytokine Family to Establish Mutualism.

    Fung TC, Bessman NJ, Hepworth MR, Kumar N, Shibata N et al.

    Immunity 2016;44;3;634-646

  • HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.

    Forster SC, Browne HP, Kumar N, Hunt M, Denise H et al.

    Nucleic acids research 2016;44;D1;D604-9

  • Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum.

    Kumar N, Lad G, Giuntini E, Kaye ME, Udomwong P et al.

    Open biology 2015;5;1;140133

  • Population genomics of Sinorhizobium medicae based on low-coverage sequencing of sympatric isolates.

    Bailly X, Giuntini E, Sexton MC, Lower RP, Harrison PW et al.

    The ISME journal 2011;5;11;1722-34

  • TBrowse: an integrative genomics map of Mycobacterium tuberculosis.

    Bhardwaj A, Bhartiya D, Kumar N, Open Source Drug Discovery Consortium and Scaria V

    Tuberculosis (Edinburgh, Scotland) 2009;89;5;386-7

Kumar, Nitin
Nitin's Timeline
2018

Senior Bioinformatician

2014

Postdoctoral Fellow

2013

PhD Bioinformatics (University of York)

Radhika V. Sreedhar Scholarship for outstanding performance in PhD.