We made our Illumina/Solexa and 454 sequence reads available through the links below as they were made available via the European Nucleotide Archive. Assembled genome data are made available via the ftp links for individual organisms on a regular basis.
Helminth genomes - data download
- Globodera pallida (globodera_pallida282)
Globodera pallida transcriptomics - Hymenolepis microstoma (hymenolepis_microstoma2888)
Analysis of RNA expression in tapeworm species - Globodera pallida (globodera_pallida349)
Globodera pallida genomic sequencing - Strongyloides ratti (strongyloides_ratti2515)
Strongyloides ratti – molecular basis of parasitism - Echinococcus multilocularis (echinococcus_multilocularis143)
The genome sequence of the tapeworm Echinococcus multilocularis - Hymenolepis microstoma (hymenolepis_microstoma394)
The genome sequence of the cestode flatworm Hymenolepis microstoma - Trichuris muris (trichuris_muris375)
The genome sequence of the murine whipworm Trichuris muris - Nippostrongylus brasiliensis (nippostrongylus_brasiliensis1947)
50 Helminth Genomes Initiative - Echinococcus multilocularis (echinococcus_multilocularis249)
E.multilocularis transcriptome - Schistosoma mansoni (schistosoma_mansoni2317)
Schistosoma mansoni smallRNA-Seq and strand specific RNA-seq - Ascaris suum (ascaris_suum493)
The genome sequence of the intestinal roundworm Ascaris suum - Haemonchus contortus (haemonchus_contortus1697)
Haemonchus contortus Ivermectin Resistance - Schistosoma mansoni (schistosoma_mansoni2495)
Schistosoma mansoni – virus transduced - Strongyloides ratti (strongyloides_ratti291)
Strongyloides ratti genome sequencing - Nippostrongylus brasiliensis (nippostrongylus_brasiliensis636)
The genome sequence of Nippostrongylus brasiliensis - Schistosoma mansoni (schistosoma_mansoni1947)
50 Helminth Genomes Initiative - Haemonchus contortus (haemonchus_contortus661)
Haemonchus contortus genome sequencing - Caenorhabditis elegans (caenorhabditis_elegans416)
Optimisation of whole genome amplification for helminth sequencing - Onchocerca volvulus (onchocerca_volvulus510)
The genome sequence of the filarial nematode Onchocerca volvulus - Schistosoma mansoni (schistosoma_mansoni452)
Identification of genes responsible for S.mansoni resistance to oxamniquine - Schistosoma mansoni (schistosoma_mansoni633)
Sequence-based mapping of Schistosoma mansoni pooled BACs - Schistosoma mansoni (schistosoma_mansoni275)
Schistosoma mansoni genome sequencing - Haemonchus contortus (haemonchus_contortus2212)
Haemonchus contortus BAC pool sequencing - Echinococcus granulosus (echinococcus_granulosus2888)
Analysis of RNA expression in tapeworm species - Trichuris muris (trichuris_muris702)
Trichuris muris transcriptomics - Hymenolepis microstoma (hymenolepis_microstoma464)
Transcriptome sequencing of Hymenolepis microstoma: a classic laboratory model in cestodology - Echinococcus multilocularis (echinococcus_multilocularis2888)
Analysis of RNA expression in tapeworm species - Echinococcus granulosus (echinococcus_granulosus477)
The genome sequence of the cestode tapeworm Echinococcus granulosus - Schistosoma mansoni (schistosoma_mansoni2227)
Comparative genomics of Schistosoma - Haemonchus contortus (haemonchus_contortus1947)
50 Helminth Genomes Initiative - Strongyloides ratti (strongyloides_ratti2669)
Strongyloides ratti diversity - Strongyloides ratti (strongyloides_ratti521)
Transcriptome sequencing of Strongyloides ratti - Schistosoma mansoni (schistosoma_mansoni2483)
S. mansoni male and female adult worm reproductive organs pre- and post-pairing – Liberia genome reference - Caenorhabditis elegans (caenorhabditis_elegans1947)
50 Helminth Genomes Initiative - Schistosoma mansoni (schistosoma_mansoni2484)
Praziquantel mode of action and resistance - Haemonchus contortus (haemonchus_contortus216)
Haemonchus contortus transcriptome - Echinococcus granulosus (echinococcus_granulosus2092)
Cestode transcriptomics - Onchocerca volvulus (onchocerca_volvulus1982)
Onchocerca volvulus transcriptomics - Onchocerca volvulus (onchocerca_volvulus1947)
50 Helminth Genomes Initiative - Echinococcus multilocularis (echinococcus_multilocularis2092)
Cestode transcriptomics - Schistosoma mansoni (schistosoma_mansoni483)
Schistosoma mansoni pLNHX-SmACT-Luc sequencing
Collaborative Projects:
50 Helminth genomes initiative:
The draft genomes of many nematodes, cestodes and trematodes are available.
Sequence data for each project is accessible for download from the FTP site and searching using 50HGI BLAST. These are available from the Sanger Institute as part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Sanger Institute (including details of any publication moratoria), please see the data sharing policy.
Related Links
Data use
This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.