A k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.

Download and Installation

Please see our GitHub page for download and installation instructions.

Learn and Support

For more information and advice on using this software please see our GitHub page.

License and Citation

SeroBA is available under GPL3.

If you make use of this software in your research, please cite as:

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data
Epping L, van Tonder, AJ, Gladstone RA, GPS Consortium, Bentley SD, Page AJ, Keane JA,
Microbial Genomics 2018; doi: 10.1099/mgen.0.000186


If you need help or have any queries, please contact us using the details below.

Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.

Tool Type