GRAFT (Genomic Rearrangement Assembly For Tumours) is an algorithm designed to time rearrangements.

This algorithm uses integer allelic copy number (from PICNIC for example), associated aberrantly mapping paired end read data, and point mutation data.

Download and Installation

This code requires Matlab with the statistics toolbox.

License and Citation

All GRAFT code has been made available under a BSD license and shall continue to be developed under this license. Please read the licensing agreement before downloading and using the software:

CGP Software License
Copyright © 2013 Genome Research Ltd.
Author: Cancer Genome Project,

This software is provided "as is", without warranty of any kind, express or implied, including but not limited to the warranties of merchantability, fitness for a particular purpose and noninfringement. In no event shall the authors or copyright holders be liable for any claim, damages or other liability, whether in an action of contract, tort or otherwise, arising from, out of or in connection with the software or the use or other dealings in the software.

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License.

Any redistribution or derivation in whole or in part including any substantial portion of this code must include this copyright and permission notice.