gap: maximum gap size allowed to join the two contigs node: number of CPU threads score: Smith-waterman score
Note: using larger gap size can increase scaffold size, but sometimes, it also brings errors.
======== Install: ======== gunzip cross_genome.tar.gz tar xvf cross_genome.tar make
License and Citation
Copyright (C) 2009 - 2015 Genome Research Ltd.
Author: Zemin Ning
Cross_genome is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
Please contact Zemin Ning ( email@example.com ) for any further information.