BamView

BamView

BamView

Overview

An interactive Java application for visualising read-alignment data stored in BAM files.

Download and Installation

Please see our GitHub page for download and installation instructions.

Learn and Support

For more information and advice on using this software please see the Artemis manual and our GitHub page.

In addition, an email discussion list called artemis-users is available and posts to the list since September 2001 are archived at mail-archive.com

License and Citation

BamView is available under GPL3.

If you make use of this software in your research, please cite as:

BamView: visualizing and interpretation of next-generation sequencing read alignments.

Carver T, Harris SR, Otto TD, Berriman M, Parkhill J and McQuillan JA

Briefings in bioinformatics 2013;14;2;203-12
PUBMED: 22253280; PMC: 3603209; DOI: 10.1093/bib/bbr073

Contact

If you need help or have any queries, please contact us using the details below.

Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.

Publications

  • BamView: visualizing and interpretation of next-generation sequencing read alignments.

    Carver T, Harris SR, Otto TD, Berriman M, Parkhill J and McQuillan JA

    Briefings in bioinformatics 2013;14;2;203-12

  • BamView: viewing mapped read alignment data in the context of the reference sequence.

    Carver T, Böhme U, Otto TD, Parkhill J and Berriman M

    Bioinformatics (Oxford, England) 2010;26;5;676-7