Dr Stijn van Dongen
Senior Software Developer
I work in the Cellular Genetics Informatics lab at the Wellcome Sanger institute, providing pipeline development and analysis services for RNA-seq, Chip-Seq, ATAC-seq and others. Currently our pipelines run under Nextflow, an elegant and powerful language to express and manage process dependencies and parallellisation.
Joined the Cellular Genetics Informatics lab under Vladimir Kiselev as senior software developer
Release of mcl-14-137, the still-current and stable mcl release
Wrote my first R code
The Sylamer paper with Cei-Abreu Goodger and Anton Enright was published.
The Enright lab moved to the EBI, myself included.
Joined the Anton Enright lab as a senior software developer
Published the TribeMCL paper with Anton Enright and Christos Ouzounis whilst working at the software company diff in Amsterdam
Initial relase of the mcl software
PhD Graph clustering by flow simulation under Michiel Hazewinkel and Jan van Eijck in Utrecht
Wrote my first C code
Wrote my first Perl code
Civiliian duty at the Centre for Mathematics and Computing Science in Amsterdam
Graduated at Technical University Eindhoven under Arjeh Cohen on the subject of exact computation of the sign of a real algebraic number