I am a software engineer at Cellular Genetics Informatics group. My main area of responsiblity is developing computational pipelines and ensuring they run stable on the computational infrastructure (Kubernetes cluster). My duties can also include open source contributions to the tooling our group uses for running workflows.
Predicting the mutations generated by repair of Cas9-induced double-strand breaks.
Nature biotechnology 2018
JACKS: joint analysis of CRISPR/Cas9 knockout screens.
Genome research 2019;29;3;464-471
Using bio.tools to generate and annotate workbench tool descriptions.