Anton Khodak | Senior Software Developer

Khodak, Anton

I am a software developer/bioinformatician at Cellular Genetics Informatics group. I provide solutions for different computational needs of our department: developing paper supplement websites and our own applications (a web interface for running computational pipelines), investigating on, supporting, writing plugins for third-party services (sample and experiment tracking). My duties also include or included maintaining applications infrastructure (a Kubernetes cluster) and services deployments (JupyterHub, etc.).

Publications

  • Predicting the mutations generated by repair of Cas9-induced double-strand breaks.

    Allen F, Crepaldi L, Alsinet C, Strong AJ, Kleshchevnikov V et al.

    Nature biotechnology 2018

  • JACKS: joint analysis of CRISPR/Cas9 knockout screens.

    Allen F, Behan F, Khodak A, Iorio F, Yusa K et al.

    Genome research 2019;29;3;464-471

  • Using bio.tools to generate and annotate workbench tool descriptions.

    Hillion KH, Kuzmin I, Khodak A, Rasche E, Crusoe M et al.

    F1000Research 2017;6

  • JACKS: joint analysis of CRISPR/Cas9 knockout screens.

    Allen F, Behan F, Khodak A, Iorio F, Yusa K et al.

    Genome research 2019;29;3;464-471

  • Predicting the mutations generated by repair of Cas9-induced double-strand breaks.

    Allen F, Crepaldi L, Alsinet C, Strong AJ, Kleshchevnikov V et al.

    Nature biotechnology 2018

Khodak, Anton
Anton's Timeline
2018

MSc in Computer Science, Kyiv Polytechnic Institute

Senior Software Developer, Sanger Institute

2017

Software developer, contractor project for CERN / New York University

BSc in System Analysis, Kyiv Polytechnic Institute

CWL Intern, Seven Bridges Genomics

2016

Google Summer of Code student, Open Bioinformatics Foundation and Common Workflow Language

2015

Software developer, gtm.com.ua