GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Smoking behavior

The human homologues of the following genes have been identified in "Smoking behavior" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
actn1 ACTN1 ENSDARG00000007219 None Not determined 1
bdnf BDNF ENSDARG00000018817 1 Not determined 5
camkk1 CAMKK1 ENSDARG00000035452 3 Not determined 1
chrna5 CHRNA5 ENSDARG00000003420 3 Normal 13
chrna6 CHRNA6 ENSDARG00000055559 1 Not determined 1
chrnb3a CHRNB3 ENSDARG00000052764 2 Not determined 2
chrnb3b CHRNB3 ENSDARG00000038508 None Not determined 2
dbh DBH ENSDARG00000069446 2 Not determined 1
LOC568467 CHRNA3 ENSDARG00000054497 2 Not determined 15
mao MAOA ENSDARG00000023712 4 Not determined 1
NP_001099135.1 CABLES1 ENSDARG00000062044 1 Not determined 6
PNPLA8 (2 of 2) PNPLA8 ENSDARG00000074093 1 Not determined 1
si:ch211-113p18.4 EGLN2 ENSDARG00000062562 None Not determined 2
si:ch211-127i16.2 MAOA ENSDARG00000092976 None Not determined 1
si:ch211-55i2.1 BBX ENSDARG00000012699 3 Not determined 1
si:dkeyp-115d2.5 SPOCK2 ENSDARG00000075393 2 Not determined 2
si:dkeyp-81e1.5 TRPC5 ENSDARG00000060837 9 Not determined 1
si:dkeyp-81f3.3 PNPLA8 ENSDARG00000078745 2 Not determined 1
trpc5 TRPC5 ENSDARG00000070504 5 Not determined 1
zgc:110447 DNAJB9 ENSDARG00000016886 None Not determined 1
zgc:114162 DNAJB9 ENSDARG00000052072 None Not determined 1
zgc:194737 CAMKK1 ENSDARG00000015134 4 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • AK002179
  • C1orf100
  • C7orf66
  • C7orf66
  • C7orf66
  • CYP2A6
  • CYP2A6
  • CYP2A6
  • CYP2B6
  • LOC100188947
  • LOC133789
  • LOC154907
  • LOC154907
  • LOC154907
  • LOC503519
  • RAB4D
  • SET7
  • THAP5
  • THAP5
  • THAP5
  • ZNF505
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