GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Refractive error

The human homologues of the following genes have been identified in "Refractive error" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
acta1b ACTC1 ENSDARG00000055618 2 Not determined 2
actc1b ACTC1 ENSDARG00000037840 2 Not determined 2
bicc1 BICC1 ENSDARG00000070497 5 Not determined 2
bmp2a BMP2 ENSDARG00000013409 None Not determined 7
bmp2b BMP2 ENSDARG00000041430 1 Not determined 7
bmp3 BMP3 ENSDARG00000060526 None Not determined 3
cacna1da CACNA1D ENSDARG00000024004 2 Normal 3
chd7 CHD7 ENSDARG00000075211 10 Not determined 2
CHRNG CHRNG ENSDARG00000086647 1 Not determined 1
cndp2 CNDP2 ENSDARG00000003931 1 Not determined 1
cx35 GJD2 ENSDARG00000070781 None Not determined 2
cyp26a1 CYP26A1 ENSDARG00000033999 1 Normal 2
gria4a GRIA4 ENSDARG00000037496 1 Not determined 1
gria4b GRIA4 ENSDARG00000059368 7 Not determined 1
hm:zewp0073 ACTC1 ENSDARG00000042535 1 Not determined 2
hm:zewp0073 ACTC1 ENSDARG00000076126 None Not determined 2
LAMA2 LAMA2 ENSDARG00000087250 None Not determined 2
LOC100332354 SHISA6 ENSDARG00000086475 None Not determined 2
LOC100332923 SHISA6 ENSDARG00000089298 None Not determined 2
LOC100334937 GJD2 ENSDARG00000067999 None Not determined 2
LOC556987 GJD2 ENSDARG00000054744 3 Not determined 2
LOC564522 KCNJ2 ENSDARG00000019418 None Not determined 9
myo1d MYO1D ENSDARG00000036863 6 Not determined 3
NM_203420.1 BICC1 ENSDARG00000076557 None Not determined 2
NP_981965.1 BICC1 ENSDARG00000075157 None Not determined 2
pcca PCCA ENSDARG00000028982 3 Normal 1
PTPRR PTPRR ENSDARG00000086462 1 Not determined 1
rasgrf1 RASGRF1 ENSDARG00000073824 2 Not determined 3
rbfox1 RBFOX1 ENSDARG00000014746 4 Not determined 3
rbfox1l RBFOX1 ENSDARG00000021184 2 Not determined 3
rdh1 RDH5 ENSDARG00000017882 2 Not determined 1
rdh5 RDH5 ENSDARG00000008306 3 Not determined 1
rorb RORB ENSDARG00000033498 None Not determined 2
rorca RORB ENSDARG00000057231 None Not determined 2
SHISA6 (1 of 3) SHISA6 ENSDARG00000087598 None Not determined 2
si:ch211-8c17.5 KCNJ2 ENSDARG00000038373 1 Not determined 9
si:dkey-149i17.7 ZIC2 ENSDARG00000094684 None Not determined 1
si:dkey-158a20.2 RORB ENSDARG00000017780 1 Not determined 2
si:dkey-173g15.1 ZMAT4 ENSDARG00000092987 None Not determined 2
si:dkey-246l19.1 GOLGA8B ENSDARG00000063197 1 Not determined 1
si:dkey-29l6.1 KCNQ5 ENSDARG00000069954 5 Not determined 1
si:dkey-7m11.2 KCNQ5 ENSDARG00000069953 4 Not determined 1
six6a SIX6 ENSDARG00000025187 3 Not determined 4
six6b SIX6 ENSDARG00000031316 None Not determined 4
six7 SIX6 ENSDARG00000070107 None Not determined 4
six9 SIX6 ENSDARG00000068407 1 Not determined 4
tjp2a TJP2 ENSDARG00000063309 1 Not determined 2
tjp2b TJP2 ENSDARG00000023443 4 Not determined 2
tox TOX ENSDARG00000032317 2 Not determined 3
zgc:171482 ZMAT4 ENSDARG00000074415 None Not determined 2
zgc:194261 GJD2 ENSDARG00000035340 1 Not determined 2
zgc:86709 ACTC1 ENSDARG00000057911 None Not determined 2
zgc:86725 ACTC1 ENSDARG00000079111 1 Not determined 2
zic2a ZIC2 ENSDARG00000015554 None Not determined 1
zic2b ZIC2 ENSDARG00000037178 1 Not determined 1
zic6 ZIC2 ENSDARG00000071496 2 Not determined 1
zmat4 ZMAT4 ENSDARG00000061419 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC100506035
  • PRSS56
  • PRSS56
Short-link