GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Myopia (pathological)

The human homologues of the following genes have been identified in "Myopia (pathological)" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abca1a ABCA1 ENSDARG00000074635 9 Not determined 13
aspa ASPA ENSDARG00000005154 None Not determined 1
B6E448_DANRE SEMA4F ENSDARG00000079014 3 Not determined 1
bmp6 BMP6 ENSDARG00000015686 None Not determined 4
C7U131_DANRE PTPRD ENSDARG00000044635 3 Not determined 11
capn9 CAPN9 ENSDARG00000012341 2 Not determined 1
ctnnd2a CTNND2 ENSDARG00000062415 2 Not determined 1
ctnnd2b CTNND2 ENSDARG00000003779 3 Not determined 1
dhx15 DHX15 ENSDARG00000015392 3 1 phenotype 1
dnah9 DNAH9 ENSDARG00000011633 None Not determined 1
DNAH9 (1 of 2) DNAH9 ENSDARG00000087466 None Not determined 1
fhit FHIT ENSDARG00000068850 None Not determined 9
fhit FHIT ENSDARG00000078195 None Not determined 9
fli1a FLI1 ENSDARG00000054632 1 Not determined 3
fli1b FLI1 ENSDARG00000040080 1 Not determined 3
gata4 GATA4 ENSDARG00000035759 2 Not determined 2
im:6903007 MIPEP ENSDARG00000055339 None Not determined 3
im:7149628 MSRA ENSDARG00000055270 1 Not determined 6
LOC569664 CLSTN2 ENSDARG00000060638 4 Not determined 4
mipep MIPEP ENSDARG00000055344 1 Not determined 3
pcdh1 PCDH1 ENSDARG00000036175 6 Not determined 2
ppp1r3b PPP1R3B ENSDARG00000044691 None Not determined 9
PTPRD (2 of 2) PTPRD ENSDARG00000059452 6 Not determined 11
ptprdb PTPRD ENSDARG00000019945 12 Normal 11
ptprn2 PTPRN2 ENSDARG00000035970 7 Not determined 4
Q502M3_DANRE SPTBN1 ENSDARG00000036402 6 Not determined 5
si:ch211-273a21.1 CNTN5 ENSDARG00000013647 3 2 normal 6
si:ch211-51m24.3 CHD4 ENSDARG00000063535 6 Not determined 1
si:dkey-18f22.3 PCDH1 ENSDARG00000062720 2 Not determined 2
si:dkey-221h15.1 MSRA ENSDARG00000029587 3 Not determined 6
si:dkey-242g16.2 PPP1R3B ENSDARG00000069377 None Not determined 9
si:dkey-261o10.2 DENND1A ENSDARG00000014592 3 Not determined 3
si:dkeyp-55c8.1 CLSTN2 ENSDARG00000060637 4 Not determined 4
SPTBN1 (1 of 2) SPTBN1 ENSDARG00000079113 4 Not determined 5
TACC2 TACC2 ENSDARG00000062790 2 Not determined 2
vipr2 VIPR2 ENSDARG00000012353 1 Not determined 1
wu:fd12d03 CHD4 ENSDARG00000025789 2 Not determined 1
zgc:152897 PARP8 ENSDARG00000059789 3 Not determined 1
zgc:171581 ABCA1 ENSDARG00000079009 7 Not determined 13
zgc:55318 CNTN5 ENSDARG00000021584 3 Not determined 6
zgc:77112 PPP1R3B ENSDARG00000015657 None Not determined 9
zgc:85932 CAPN9 ENSDARG00000055094 1 Not determined 1
zgc:92432 SNTB1 ENSDARG00000041729 3 Not determined 1
znf536 ZNF536 ENSDARG00000022251 3 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • BLID
  • C1QTNF9B
  • C1QTNF9B-AS1
  • KIAA1303
  • LOC100129620
  • LOC399959
  • LOC646021
  • MIR124-1
  • MIR4660
  • MYP10
  • MYP11
  • MYP11
  • PML
  • SRPK2
  • ZC3H11B
  • ZNF285A
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