GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Chronic lymphocytic leukemia

The human homologues of the following genes have been identified in "Chronic lymphocytic leukemia" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A0JMB2_DANRE NEDD4 ENSDARG00000039778 4 Not determined 3
BAK1 (2 of 2) BAK1 ENSDARG00000089995 None Not determined 7
baxb BAK1 ENSDARG00000030881 None Not determined 7
cxxc1 CXXC1 ENSDARG00000025718 None Not determined 1
cxxc1l CXXC1 ENSDARG00000016187 1 Not determined 1
FARP2 FARP2 ENSDARG00000016429 5 Not determined 1
irf4a IRF4 ENSDARG00000006560 1 Not determined 7
irf4b IRF4 ENSDARG00000055374 None Not determined 7
irf8 IRF8 ENSDARG00000056407 None Not determined 9
LOC100332318 GRAMD1B ENSDARG00000074258 3 Not determined 1
LOC555649 SP140 ENSDARG00000090449 4 Not determined 4
LOC560368 RFX7 ENSDARG00000077237 2 Not determined 1
LOC573829 CPEB1 ENSDARG00000053117 None Not determined 1
mbd1 MBD1 ENSDARG00000025699 7 Not determined 1
MBD1 (2 of 2) MBD1 ENSDARG00000088407 1 Not determined 1
mhc2dab HLA-DRB5 ENSDARG00000079105 None Not determined 6
NEDD4 (2 of 2) NEDD4 ENSDARG00000091747 None Not determined 3
NP_001091732.1 HLA-DRB5 ENSDARG00000071168 1 Not determined 6
PRKD2 (3 of 3) PRKD2 ENSDARG00000087018 1 Not determined 1
PRKD2 (2 of 3) PRKD2 ENSDARG00000090158 None Not determined 1
PRKD2 (1 of 3) PRKD2 ENSDARG00000086199 None Not determined 1
RFX7 (2 of 2) RFX7 ENSDARG00000074522 2 Not determined 1
si:busm1-104n07.3 HLA-DRB5 ENSDARG00000074510 1 Normal 6
si:busm1-160c18.1 HLA-DQA1 ENSDARG00000053739 2 Not determined 27
si:busm1-160c18.3 HLA-DRB5 ENSDARG00000053738 None Not determined 6
si:busm1-160c18.3 HLA-DRB5 ENSDARG00000093706 None Not determined 6
si:busm1-194e12.11 HLA-DQA1 ENSDARG00000055441 1 Not determined 27
si:busm1-194e12.12 HLA-DRB5 ENSDARG00000055447 None Not determined 6
si:busm1-228j01.3 HLA-DQA1 ENSDARG00000086294 2 Not determined 27
si:busm1-228j01.4 HLA-DRB5 ENSDARG00000088872 2 Not determined 6
si:busm1-228j01.5 HLA-DQA1 ENSDARG00000079593 3 Not determined 27
si:busm1-228j01.6 HLA-DRB5 ENSDARG00000041705 1 Not determined 6
si:ch1073-403i13.1 HLA-DQA1 ENSDARG00000001832 None Not determined 27
si:ch211-205h19.1 ACOXL ENSDARG00000020149 2 Not determined 6
si:ch211-249g19.1 GRAMD1B ENSDARG00000075383 1 Not determined 1
si:ch73-211l2.3 HLA-DQA1 ENSDARG00000075932 1 Not determined 27
si:dkeyp-2h4.2 HLA-DQA1 ENSDARG00000031745 None Not determined 27
si:zfos-2070c2.1 HLA-DQA1 ENSDARG00000070206 None Not determined 27
si:zfos-2070c2.3 HLA-DRB5 ENSDARG00000076307 None Not determined 6
si:zfos-367g9.1 HLA-DQA1 ENSDARG00000074816 1 Not determined 27
strn4 STRN4 ENSDARG00000044202 None Not determined 1
strn4 STRN4 ENSDARG00000086823 1 Not determined 1
wu:fd58b11 HLA-DRB5 ENSDARG00000054921 None Not determined 6
zgc:113411 SP140 ENSDARG00000038133 1 Not determined 4
zgc:123107 HLA-DQA1 ENSDARG00000020286 None Not determined 27
zgc:153067 HLA-DRB5 ENSDARG00000056330 2 Not determined 6
zgc:153993 BAK1 ENSDARG00000068102 None Not determined 7
zgc:175248 PRKD2 ENSDARG00000013544 1 Not determined 1
zgc:194449 CPEB1 ENSDARG00000045932 None Not determined 1
zorba CPEB1 ENSDARG00000008454 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • BCL2L11
  • SP110
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