GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Alcohol dependence

The human homologues of the following genes have been identified in "Alcohol dependence" studies:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A9JTH3_DANRE PPP2R2B ENSDARG00000044334 None Not determined 2
adh5 ADH5 ENSDARG00000080010 None Not determined 2
adh8a ADH4 ENSDARG00000091211 2 Not determined 2
adh8a ADH1A ENSDARG00000091211 2 Not determined 1
adh8a ADH1B ENSDARG00000091211 2 Not determined 5
adh8a ADH6 ENSDARG00000091211 2 Not determined 2
adh8a ADH7 ENSDARG00000091211 2 Not determined 3
adh8b ADH4 ENSDARG00000024278 None Not determined 2
adh8b ADH1A ENSDARG00000024278 None Not determined 1
adh8b ADH1B ENSDARG00000024278 None Not determined 5
adh8b ADH6 ENSDARG00000024278 None Not determined 2
adh8b ADH7 ENSDARG00000024278 None Not determined 3
cast CAST ENSDARG00000058693 10 Not determined 1
esr1 ESR1 ENSDARG00000004111 1 Not determined 14
fabp3 FABP3 ENSDARG00000023290 None Not determined 1
gpd1 GPD1L ENSDARG00000036942 2 Not determined 1
gpd1l GPD1L ENSDARG00000040024 None Not determined 1
LOC100000374 SYT17 ENSDARG00000060741 2 Not determined 1
LOC555222 SH3BP5 ENSDARG00000008336 None Not determined 2
LOC559878 USP12 ENSDARG00000074367 None Not determined 2
nxph2a NXPH2 ENSDARG00000063224 None Not determined 2
nxph2b NXPH2 ENSDARG00000079188 None Not determined 2
pecr PECR ENSDARG00000055976 None Not determined 1
pknox2 PKNOX2 ENSDARG00000055349 3 Normal 7
PPP2R2B (2 of 3) PPP2R2B ENSDARG00000053673 None Not determined 2
ppp2r2bb PPP2R2B ENSDARG00000079583 None Not determined 2
serinc2 SERINC2 ENSDARG00000056532 None Not determined 1
sh3bp5 SH3BP5 ENSDARG00000013657 None Not determined 2
si:ch211-255i3.3 SERINC2 ENSDARG00000053425 None Not determined 1
si:dkey-24n17.6 ERAP1 ENSDARG00000013024 2 Not determined 7
snrnp40 SNRNP40 ENSDARG00000023160 4 Not determined 1
usp12a USP12 ENSDARG00000078109 None Not determined 2
zcchc17 ZCCHC17 ENSDARG00000018936 None Not determined 1
zgc:100920 NKAIN1 ENSDARG00000042961 1 Not determined 1
zgc:123195 C3orf31 ENSDARG00000040113 None Not determined 1
zgc:56194 ERAP1 ENSDARG00000021859 1 Not determined 7
zgc:63568 ADH1B ENSDARG00000087262 2 Not determined 5
zgc:63568 ADH6 ENSDARG00000087262 2 Not determined 2
zgc:63568 ADH7 ENSDARG00000087262 2 Not determined 3
zgc:63568 ADH4 ENSDARG00000087262 2 Not determined 2
zgc:63568 ADH1A ENSDARG00000087262 2 Not determined 1
zgc:65908 NKAIN1 ENSDARG00000006859 2 Not determined 1
zgc:77938 ADH4 ENSDARG00000088366 3 Not determined 2
zgc:77938 ADH1A ENSDARG00000088366 3 Not determined 1
zgc:77938 ADH1B ENSDARG00000088366 3 Not determined 5
zgc:77938 ADH6 ENSDARG00000088366 3 Not determined 2
zgc:77938 ADH7 ENSDARG00000088366 3 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • ADH1C
  • ADH1C
  • KIAA0040
  • ZNF124
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