GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
igf2bp2a IGF2BP2 ENSDARG00000003421 1 Not determined 12
igf2bp2b IGF2BP2 ENSDARG00000061661 2 Not determined 12
LOC555552 RHOU ENSDARG00000005626 None Not determined 5
NP_001003748.1 SGCG ENSDARG00000090096 None Not determined 3
nxn NXN ENSDARG00000033978 2 Not determined 2
pck1 PCK1 ENSDARG00000013522 None Not determined 2
rbm38 RBM38 ENSDARG00000058818 1 Not determined 3
rhoua RHOU ENSDARG00000019709 4 Not determined 5
rhoub RHOU ENSDARG00000012968 None Not determined 5
SACS (2 of 2) SACS ENSDARG00000062627 9 Not determined 3
SACS (1 of 2) SACS ENSDARG00000091042 None Not determined 3
sgcg SGCG ENSDARG00000038107 2 Not determined 3
si:dkeyp-118h9.7 SACS ENSDARG00000075668 11 Not determined 3
tcf7l2 TCF7L2 ENSDARG00000004415 5 Not determined 23
wisp1a WISP1 ENSDARG00000054331 3 Not determined 1
wisp1b WISP1 ENSDARG00000076685 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • CTCFL
  • HMG1L1
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