GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
gc AFP ENSDARG00000089310 1 Not determined 1
si:ch211-126g16.10 B3GNT3 ENSDARG00000054373 1 Not determined 1
si:ch211-126g16.11 B3GNT3 ENSDARG00000093521 2 Not determined 1
zgc:171538 B3GNT3 ENSDARG00000058100 1 Not determined 1
zgc:86586 B3GNT3 ENSDARG00000043482 4 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • ABO
  • CA11
  • FAM3B
  • FUT2
  • FUT2
  • FUT6
  • FUT6
  • FUT6
  • FUT6
  • HISPPD2A
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