GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ccnd2a CCND2 ENSDARG00000051748 None Not determined 7
ccnd2b CCND2 ENSDARG00000070408 None Not determined 7
fgf23 FGF23 ENSDARG00000045854 1 Not determined 2
fgf4 FGF6 ENSDARG00000068095 None Not determined 2
fgf6a FGF6 ENSDARG00000009351 1 Not determined 2
fgf6b FGF6 ENSDARG00000045856 None Not determined 2
hao1 HAO1 ENSDARG00000024160 2 Not determined 1
parp12b PARP11 ENSDARG00000057974 None Not determined 2
pitx1 PITX1 ENSDARG00000042785 None Not determined 4
PLCB1 (2 of 2) PLCB1 ENSDARG00000068594 2 Not determined 4
PLCB1 (1 of 2) PLCB1 ENSDARG00000090084 None Not determined 4
rad51ap1 RAD51AP1 ENSDARG00000045853 1 Not determined 2
si:ch211-214j24.1 RAD51AP1 ENSDARG00000092046 None Not determined 2
si:dkey-61p9.6 HSPA12A ENSDARG00000068869 5 Not determined 1
tigara C12orf5 ENSDARG00000051749 4 Not determined 3
tigarb C12orf5 ENSDARG00000045858 None Not determined 3
zgc:103502 CCND2 ENSDARG00000027391 None Not determined 7
zgc:153612 HSPA12A ENSDARG00000070603 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • CATSPER3
  • CATSPER3
  • MIR4461 and H2AFY
  • MIR4461 and H2AFY
  • PCBD2
  • PCBD2
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