GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ATP6V1C2 ATP6V1C2 ENSDARG00000070440 2 Not determined 1
cdh7 CDH7 ENSDARG00000023542 4 Not determined 1
dlgap1 DLGAP1 ENSDARG00000014280 2 Not determined 4
LOC100007048 BCL2 ENSDARG00000089109 1 Not determined 1
LOC100329245 CDH7 ENSDARG00000017649 2 Not determined 1
LOC100331199 TNNT2 ENSDARG00000031920 None Not determined 1
LOC560607 CASR ENSDARG00000013649 1 Not determined 4
LOC564928 GPR26 ENSDARG00000074389 None Not determined 1
lrriq3 LRRIQ3 ENSDARG00000078611 None Not determined 2
ncoa2 NCOA2 ENSDARG00000017929 3 Not determined 3
NP_001025424.1 BCL2 ENSDARG00000025613 None Not determined 1
nrg1 NRG1 ENSDARG00000068458 1 Not determined 6
si:ch211-248a16.1 DLGAP1 ENSDARG00000037415 2 Not determined 4
si:ch211-274c22.6 TNFAIP3 ENSDARG00000027777 5 Not determined 11
si:dkey-200l5.5 STARD7 ENSDARG00000074858 3 Not determined 1
si:dkey-266f7.1 C8orf80 ENSDARG00000094283 1 Not determined 1
si:dkey-266f7.3 C8orf80 ENSDARG00000058672 1 Not determined 1
si:dkeyp-85e10.1 C8orf80 ENSDARG00000071001 1 Not determined 1
si:dkeyp-85e10.2 C8orf80 ENSDARG00000091951 None Not determined 1
si:dkeyp-85e10.3 C8orf80 ENSDARG00000092878 None Not determined 1
tnnt2a TNNT2 ENSDARG00000020610 2 Not determined 1
tnnt2c TNNT2 ENSDARG00000032242 1 Not determined 1
tnnt2d TNNT2 ENSDARG00000002988 None Not determined 1
tnnt2e TNNT2 ENSDARG00000045822 2 Not determined 1
tram1 TRAM1 ENSDARG00000019137 1 Not determined 1
zgc:113278 TRAM1 ENSDARG00000037813 1 Not determined 1
zgc:153993 BCL2 ENSDARG00000068102 None Not determined 1
zgc:154176 FBLIM1 ENSDARG00000071558 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • CXCL13
  • HNT
  • LOC129656
  • OR2B7P
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