GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Discovery and fine mapping of serum protein loci through transethnic meta-analysis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ARID5B ARID5B ENSDARG00000037196 2 Not determined 7
cd40 TNFRSF11A ENSDARG00000054968 None Not determined 6
chrna5 CHRNA5 ENSDARG00000003420 3 Normal 13
ell2 ELL2 ENSDARG00000006251 4 Not determined 1
LOC100332162 FNDC4 ENSDARG00000009949 None Not determined 4
LOC100333044 GCKR ENSDARG00000086620 None Not determined 39
LOC100333062 WDR81 ENSDARG00000079702 7 Not determined 2
LOC100333821 TNFRSF11A ENSDARG00000087804 None Not determined 6
LOC568467 CHRNA3 ENSDARG00000054497 2 Not determined 15
LOC569968 FRMD5 ENSDARG00000079622 3 Not determined 2
LOC795858 TNFRSF11A ENSDARG00000095718 None Not determined 6
mhc1uba FCGRT ENSDARG00000075963 None Not determined 1
mhc1ze FCGRT ENSDARG00000074765 None Not determined 1
mhc1zel FCGRT ENSDARG00000092162 1 Not determined 1
ngfr TNFRSF11A ENSDARG00000057143 2 Not determined 6
NP_001091657.1 HPN ENSDARG00000090967 None Not determined 1
NP_919406.1 FCGRT ENSDARG00000086877 1 Not determined 1
psmc3 PSMC3 ENSDARG00000007141 1 Not determined 1
Q8MHB3_DANRE FCGRT ENSDARG00000076734 None Not determined 1
Q8MHB6_DANRE FCGRT ENSDARG00000088022 1 Not determined 1
rps11 RPS11 ENSDARG00000053058 None Not determined 2
scn1ba SCN1B ENSDARG00000060222 None Not determined 1
scn1bb SCN1B ENSDARG00000071252 None Not determined 1
serpinf2 SERPINF2 ENSDARG00000076448 1 Not determined 2
si:ch211-13k12.2 ELL2 ENSDARG00000038121 1 Not determined 1
si:ch211-203l9.1 PAG1 ENSDARG00000055875 None Not determined 1
si:ch211-225p5.8 SCN1B ENSDARG00000070170 None Not determined 1
si:ch211-261n11.7 TNFRSF11A ENSDARG00000068966 None Not determined 6
si:ch211-261n11.8 TNFRSF11A ENSDARG00000089901 None Not determined 6
si:ch211-273d2.3 ZCCHC2 ENSDARG00000067950 None Not determined 1
si:ch211-287j19.6 FCGRT ENSDARG00000001470 2 Not determined 1
si:ch211-69m14.1 FRMD5 ENSDARG00000075942 7 Not determined 2
si:ch73-213j4.4 FCGRT ENSDARG00000092731 None Not determined 1
si:dkey-159f12.2 RPS11 ENSDARG00000093606 None Not determined 2
si:dkey-23c22.5 TNFRSF11A ENSDARG00000092892 1 Not determined 6
si:dkey-23c22.6 TNFRSF11A ENSDARG00000068991 None Not determined 6
si:dkey-23c22.7 TNFRSF11A ENSDARG00000095193 None Not determined 6
si:dkey-23c22.9 TNFRSF11A ENSDARG00000092381 None Not determined 6
si:dkey-33i11.3 HPN ENSDARG00000027609 None Not determined 1
si:dkey-71h2.1 FNDC4 ENSDARG00000043396 None Not determined 4
wdr76 WDR76 ENSDARG00000053554 1 Not determined 1
zgc:136614 FCGRT ENSDARG00000069471 None Not determined 1
zgc:153631 TNFRSF11A ENSDARG00000068993 1 Not determined 6
zgc:153759 TNFRSF11A ENSDARG00000068969 None Not determined 6
zgc:158410 SERPINF2 ENSDARG00000061383 1 Not determined 2
zgc:158706 ARID5B ENSDARG00000069988 None Not determined 7
zgc:158862 TNFRSF11A ENSDARG00000068963 None Not determined 6
zgc:64115 FCGRT ENSDARG00000036588 4 Not determined 1
zgc:77151 ARID5B ENSDARG00000054307 1 Not determined 7

The following reported genes could not be linked automatically to a zebrafish gene:

  • GCKR-FNDC4
  • TNFRSF13B
  • TNFRSF13B
  • TNFRSF13B
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