GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
kcnd2 KCND2 ENSDARG00000032799 2 Not determined 2
LOC555222 SH3BP5 ENSDARG00000008336 None Not determined 2
nr2c2 NR2C2 ENSDARG00000042477 3 Not determined 1
NR2C2 (2 of 2) NR2C2 ENSDARG00000094967 2 Not determined 1
pknox2 PKNOX2 ENSDARG00000055349 3 Normal 7
PLEKHG1 PLEKHG1 ENSDARG00000063484 None Not determined 4
sh3bp5 SH3BP5 ENSDARG00000013657 None Not determined 2
si:ch1073-55a19.2 RGPD2 ENSDARG00000093125 1 Not determined 1
si:ch73-317k23.2 ZFYVE20 ENSDARG00000078215 1 Not determined 1
si:dkey-31k9.2 HIVEP1 ENSDARG00000079528 6 Not determined 1
si:zfos-979f1.2 RGPD2 ENSDARG00000011652 1 Normal 1
six3a SIX3 ENSDARG00000058008 1 Not determined 2
six3b SIX3 ENSDARG00000054879 2 Not determined 2
six7 SIX3 ENSDARG00000070107 None Not determined 2
six9 SIX3 ENSDARG00000068407 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC339568
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