GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of lung function decline in adults with and without asthma.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
chd7 CHD7 ENSDARG00000075211 10 Not determined 2
CSMD1 CSMD1 ENSDARG00000058353 3 Not determined 12
NP_956202.1 MUSK ENSDARG00000000102 6 Not determined 2
pcdh9 PCDH9 ENSDARG00000063264 None Not determined 3
roraa RORA ENSDARG00000031768 2 Not determined 11
rorab RORA ENSDARG00000001910 2 Not determined 11
si:ch211-207i1.2 SYNE2 ENSDARG00000093334 None Not determined 2
si:ch211-207i1.3 SYNE2 ENSDARG00000093468 1 Not determined 2
si:ch211-281g13.4 HERC5 ENSDARG00000075389 3 Not determined 1
si:ch211-281g13.5 HERC5 ENSDARG00000074052 2 Not determined 1
si:ch73-160h15.3 DLEU7 ENSDARG00000094160 None Not determined 6
si:ch73-190m4.1 HERC5 ENSDARG00000075785 3 Not determined 1
si:ch73-312h4.1 FLRT2 ENSDARG00000079355 4 Normal 1
si:ch73-335m24.5 SLC24A3 ENSDARG00000036383 2 Not determined 2
slc24a3 SLC24A3 ENSDARG00000006760 None Not determined 2
syne2a SYNE2 ENSDARG00000030107 32 Not determined 2
syne2b SYNE2 ENSDARG00000053484 40 Not determined 2
TUSC3 (2 of 2) TUSC3 ENSDARG00000092570 None Not determined 2
TUSC3 (1 of 2) TUSC3 ENSDARG00000091571 None Not determined 2
USP15 USP15 ENSDARG00000087217 1 Not determined 1
zgc:163136 HERC5 ENSDARG00000074136 2 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • ANK1
  • FLJ25393
  • PLXNA4B
  • SOX9
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