GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
id2a ID2 ENSDARG00000055283 None Not determined 1
id2b ID2 ENSDARG00000029544 1 Not determined 1
lpp LPP ENSDARG00000023578 1 Not determined 10
si:busm1-160c18.1 HLA-DQA2 ENSDARG00000053739 2 Not determined 17
si:busm1-194e12.11 HLA-DQA2 ENSDARG00000055441 1 Not determined 17
si:busm1-228j01.3 HLA-DQA2 ENSDARG00000086294 2 Not determined 17
si:busm1-228j01.5 HLA-DQA2 ENSDARG00000079593 3 Not determined 17
si:ch1073-403i13.1 HLA-DQA2 ENSDARG00000001832 None Not determined 17
si:ch73-211l2.3 HLA-DQA2 ENSDARG00000075932 1 Not determined 17
si:dkeyp-2h4.2 HLA-DQA2 ENSDARG00000031745 None Not determined 17
si:zfos-2070c2.1 HLA-DQA2 ENSDARG00000070206 None Not determined 17
si:zfos-367g9.1 HLA-DQA2 ENSDARG00000074816 1 Not determined 17
stat6 STAT6 ENSDARG00000015902 4 Not determined 2
zgc:123107 HLA-DQA2 ENSDARG00000020286 None Not determined 17
zgc:172085 NAB2 ENSDARG00000078076 None Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • DARC
  • FCER1A
  • HLA-A
  • HLA-G
  • IL13
  • IL4R
  • OR10J3
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