GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cd40 TNFRSF11A ENSDARG00000054968 None Not determined 6
LOC100333821 TNFRSF11A ENSDARG00000087804 None Not determined 6
LOC795858 TNFRSF11A ENSDARG00000095718 None Not determined 6
ngfr TNFRSF11A ENSDARG00000057143 2 Not determined 6
nup205 NUP205 ENSDARG00000042530 7 Not determined 1
optn OPTN ENSDARG00000002663 None Not determined 2
prl PRL ENSDARG00000037946 2 Not determined 2
prl2 PRL ENSDARG00000018744 None Not determined 2
si:ch211-261n11.7 TNFRSF11A ENSDARG00000068966 None Not determined 6
si:ch211-261n11.8 TNFRSF11A ENSDARG00000089901 None Not determined 6
si:dkey-23c22.5 TNFRSF11A ENSDARG00000092892 1 Not determined 6
si:dkey-23c22.6 TNFRSF11A ENSDARG00000068991 None Not determined 6
si:dkey-23c22.7 TNFRSF11A ENSDARG00000095193 None Not determined 6
si:dkey-23c22.9 TNFRSF11A ENSDARG00000092381 None Not determined 6
slc25a43 SLC25A43 ENSDARG00000023055 None Not determined 1
TM7SF4 TM7SF4 ENSDARG00000078347 1 Not determined 1
wu:fk30a05 RIN3 ENSDARG00000077618 3 Not determined 2
zgc:153631 TNFRSF11A ENSDARG00000068993 1 Not determined 6
zgc:153759 TNFRSF11A ENSDARG00000068969 None Not determined 6
zgc:158862 TNFRSF11A ENSDARG00000068963 None Not determined 6

The following reported genes could not be linked automatically to a zebrafish gene:

  • CSF1
  • EPS8LS
  • PML
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