GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cxcr3.2 CXCR5 ENSDARG00000041041 3 Not determined 4
il12rb2 IL12RB2 ENSDARG00000052157 None Not determined 7
IL12RB2 (1 of 2) IL12RB2 ENSDARG00000093809 None Not determined 7
il12rb2l IL12RB2 ENSDARG00000074850 2 Not determined 7
il23r IL12RB2 ENSDARG00000052158 3 Not determined 7
il7r IL7R ENSDARG00000078970 None Not determined 7
irf5 IRF5 ENSDARG00000045681 None Not determined 14
LOC799019 CXCR5 ENSDARG00000010514 1 Not determined 4
plcl2 PLCL2 ENSDARG00000075247 1 Not determined 2
rad51l1 RAD51L1 ENSDARG00000037046 4 Not determined 7
si:ch211-195i21.1 DENND1B ENSDARG00000029374 1 Not determined 3
si:ch211-210g13.5 PLCL2 ENSDARG00000062575 5 Not determined 2
si:dkey-196h17.2 TNFAIP2 ENSDARG00000094072 None Not determined 1
si:dkey-196h17.3 TNFAIP2 ENSDARG00000058160 3 Not determined 1
si:dkey-273o13.5 RPS6KA4 ENSDARG00000044436 5 Not determined 3
si:dkeyp-72h1.2 TNFAIP2 ENSDARG00000043416 5 Not determined 1
stat4 STAT4 ENSDARG00000028731 3 Not determined 19
tnfrsf1a TNFRSF1A ENSDARG00000018569 2 Not determined 3
TNFRSF1A (1 of 2) TNFRSF1A ENSDARG00000090478 None Not determined 3
zgc:101654 ORMDL3 ENSDARG00000025555 1 Not determined 14
zgc:56230 CLEC16A ENSDARG00000038094 3 Not determined 13

The following reported genes could not be linked automatically to a zebrafish gene:

  • CD80
  • IL12A
  • MAP3K7IP1
  • MHC
  • NFKB1
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