GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
B0S5R9_DANRE FGF1 ENSDARG00000087715 None Not determined 1
btbd3 BTBD3 ENSDARG00000005544 1 Not determined 2
ca8 CA8 ENSDARG00000039098 1 Not determined 3
col17a1a COL17A1 ENSDARG00000069415 8 Not determined 1
col17a1b COL17A1 ENSDARG00000079011 5 Not determined 1
esrrd ESRRG ENSDARG00000015064 None Not determined 4
esrrga ESRRG ENSDARG00000004861 3 Not determined 4
esrrgb ESRRG ENSDARG00000011696 None Not determined 4
fgf1 FGF1 ENSDARG00000017542 None Not determined 1
GRIK2 (2 of 2) GRIK2 ENSDARG00000091173 None Not determined 5
GRIK2 (1 of 2) GRIK2 ENSDARG00000074515 2 Not determined 5
htr2a HTR2A ENSDARG00000057029 5 Not determined 2
jag1a JAG1 ENSDARG00000030289 5 Normal 5
jag1b JAG1 ENSDARG00000013168 3 Not determined 5
LOC100332633 FAM19A2 ENSDARG00000088011 1 Not determined 2
LOC100334818 SLC2A1 ENSDARG00000001937 1 Not determined 1
LOC559806 HTR2A ENSDARG00000058165 None Not determined 2
NRG3 NRG3 ENSDARG00000089766 3 Not determined 4
RAF1 (1 of 3) RAF1 ENSDARG00000092302 None Not determined 2
raf1a RAF1 ENSDARG00000009875 1 Not determined 2
raf1b RAF1 ENSDARG00000059406 2 Not determined 2
si:ch211-254n4.3 FAM19A2 ENSDARG00000020292 2 Not determined 2
si:ch211-51e12.7 COL17A1 ENSDARG00000045914 None Not determined 1
si:ch211-69e5.1 JAG1 ENSDARG00000079519 4 Not determined 5
si:dkey-164k14.1 PLXNA2 ENSDARG00000060372 2 Not determined 1
si:dkey-238f9.1 FAM19A2 ENSDARG00000079446 None Not determined 2
si:dkey-246k9.2 BTBD3 ENSDARG00000087517 None Not determined 2
si:dkey-281i8.3 FGF1 ENSDARG00000078625 None Not determined 1
si:dkey-3l8.7 FAM19A2 ENSDARG00000077626 None Not determined 2
si:dkey-46k9.12 PHF11 ENSDARG00000021677 5 2 normal 1
slc2a1a SLC2A1 ENSDARG00000001437 2 Not determined 1
slc2a1b SLC2A1 ENSDARG00000007412 3 Not determined 1
snap25a SNAP25 ENSDARG00000020609 1 Not determined 1
snap25b SNAP25 ENSDARG00000058117 3 Not determined 1
sox4a SOX4 ENSDARG00000004588 None Not determined 2
sox4b SOX4 ENSDARG00000043235 1 Not determined 2
ube3a UBE3A ENSDARG00000055737 2 Not determined 2
zgc:101731 SNAP25 ENSDARG00000040965 2 Not determined 1
zgc:136885 FGF1 ENSDARG00000042811 None Not determined 1
zgc:64090 C20orf94 ENSDARG00000039069 3 1 phenotype 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • C15orf54
  • DPPA4
  • MKK5
  • TRIM38
  • ZWINT
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