GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A3KP27_DANRE DGKZ ENSDARG00000014439 2 Not determined 1
AMBRA1 (2 of 2) AMBRA1 ENSDARG00000039878 2 Not determined 1
atg13 ATG13 ENSDARG00000036040 None Not determined 1
ckap5 CKAP5 ENSDARG00000005446 6 1 phenotype 1
CKAP5 (1 of 2) CKAP5 ENSDARG00000073898 None Not determined 1
DGKZ (2 of 2) DGKZ ENSDARG00000076025 7 Not determined 1
f2 F2 ENSDARG00000036041 2 Not determined 1
fas FAS ENSDARG00000043586 1 Not determined 3
harbi1 HARBI1 ENSDARG00000036038 None Not determined 1
ifih1 IFIH1 ENSDARG00000018553 1 Not determined 7
ifnphi2 IFNK ENSDARG00000069012 None Not determined 5
ifnphi3 IFNK ENSDARG00000070676 1 Not determined 5
L3MBTL4 L3MBTL4 ENSDARG00000094780 None Not determined 1
lingo2 LINGO2 ENSDARG00000069970 3 Not determined 2
LOC100148912 AADAC ENSDARG00000063621 3 Not determined 1
LOC100329261 HARBI1 ENSDARG00000043167 None Not determined 1
LOC100332642 AMBRA1 ENSDARG00000008322 5 Not determined 1
mdka MDK ENSDARG00000036036 1 Not determined 1
mdkb MDK ENSDARG00000020708 3 Not determined 1
mhc2dab HLA-DRB1 ENSDARG00000079105 None Not determined 35
NP_001091732.1 HLA-DRB1 ENSDARG00000071168 1 Not determined 35
sb:cb54 SIPA1L2 ENSDARG00000016945 1 Not determined 1
sc:d0348 LINGO2 ENSDARG00000074535 2 Not determined 2
shfm1 SHFM1 ENSDARG00000027899 None Not determined 1
si:busm1-104n07.3 HLA-DRB1 ENSDARG00000074510 1 Normal 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000053738 None Not determined 35
si:busm1-160c18.3 HLA-DRB1 ENSDARG00000093706 None Not determined 35
si:busm1-194e12.12 HLA-DRB1 ENSDARG00000055447 None Not determined 35
si:busm1-228j01.4 HLA-DRB1 ENSDARG00000088872 2 Not determined 35
si:busm1-228j01.6 HLA-DRB1 ENSDARG00000041705 1 Not determined 35
si:ch211-133l5.8 HARBI1 ENSDARG00000027676 1 Not determined 1
si:ch73-257c13.2 HARBI1 ENSDARG00000074305 None Not determined 1
si:dkey-197c15.6 HARBI1 ENSDARG00000079401 2 Not determined 1
si:zfos-2070c2.3 HLA-DRB1 ENSDARG00000076307 None Not determined 35
SIPA1L2 (3 of 3) SIPA1L2 ENSDARG00000075052 1 Not determined 1
SIPA1L2 (2 of 3) SIPA1L2 ENSDARG00000061640 3 Not determined 1
SIPA1L2 (1 of 3) SIPA1L2 ENSDARG00000088396 None Not determined 1
wu:fd58b11 HLA-DRB1 ENSDARG00000054921 None Not determined 35
zgc:113227 HARBI1 ENSDARG00000058874 None Not determined 1
zgc:153067 HLA-DRB1 ENSDARG00000056330 2 Not determined 35
zgc:162945 HARBI1 ENSDARG00000028815 2 Not determined 1
zgc:194221 HARBI1 ENSDARG00000039687 None Not determined 1
zgc:56230 CLEC16A ENSDARG00000038094 3 Not determined 13
zgc:86725 ACTA2 ENSDARG00000079111 1 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • PVT1
  • SUCNR1
Short-link