GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of pancreatic cancer in Japanese population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
arl4ca ARL4C ENSDARG00000057606 1 Not determined 1
arl4cb ARL4C ENSDARG00000032708 None Not determined 1
dpp6b DPP6 ENSDARG00000024744 4 Not determined 5
fam91a1 FAM91A1 ENSDARG00000003320 1 Not determined 2
foxq1 FOXQ1 ENSDARG00000055395 None Not determined 2
foxq1l FOXQ1 ENSDARG00000030896 3 Not determined 2
foxq2 FOXQ1 ENSDARG00000071394 1 Not determined 2
LOC100330316 BICD1 ENSDARG00000074357 2 Not determined 4
myo1d MYO1D ENSDARG00000036863 6 Not determined 3
park2 PARK2 ENSDARG00000021555 1 Not determined 4
prpsap2 PRPSAP2 ENSDARG00000019326 None Not determined 1
RNF149 RNF149 ENSDARG00000089767 None Not determined 1
si:ch211-123f21.1 PARK2 ENSDARG00000091973 None Not determined 4
si:ch211-136i24.1 BICD1 ENSDARG00000079496 5 Normal 4
si:ch211-232k18.1 DPP6 ENSDARG00000076826 2 Not determined 5
THSD7B (2 of 2) THSD7B ENSDARG00000061497 4 Not determined 3
thsd7ba THSD7B ENSDARG00000095022 2 Not determined 3
zgc:162200 BICD1 ENSDARG00000079934 1 Not determined 4
zgc:63948 NDFIP2 ENSDARG00000033928 1 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC284998
  • LOC387933
  • LOC730242
  • LOC731559
  • RNF43
  • RNF5P1
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