GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study of recurrent early-onset major depressive disorder.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ampd2 AMPD2 ENSDARG00000029952 6 Normal 1
atxn7l2a ATXN7L2 ENSDARG00000055300 2 Not determined 2
atxn7l2b ATXN7L2 ENSDARG00000056268 1 Not determined 2
C2orf71 C2orf71 ENSDARG00000037656 1 Not determined 1
ca16b PTPRG ENSDARG00000060123 5 Not determined 5
cyb561d1 CYB561D1 ENSDARG00000055295 1 Not determined 3
dsel DSEL ENSDARG00000061461 1 Not determined 2
fhit FHIT ENSDARG00000068850 None Not determined 9
fhit FHIT ENSDARG00000078195 None Not determined 9
gdnf GDNF ENSDARG00000039959 None Not determined 1
gnai1 GNAI3 ENSDARG00000021647 None Not determined 1
gnai3 GNAI3 ENSDARG00000030644 1 Not determined 1
gnaia GNAI3 ENSDARG00000044760 None Not determined 1
gnat2 GNAT2 ENSDARG00000094180 2 Not determined 1
LOC100329307 DSEL ENSDARG00000074504 1 Not determined 2
LOC558290 SYPL2 ENSDARG00000037587 1 Not determined 2
NP_571944.1 GNAT2 ENSDARG00000042529 2 Not determined 1
ptprga PTPRG ENSDARG00000045006 6 Not determined 5
si:ch211-103a14.2 AMPD2 ENSDARG00000088554 None Not determined 1
sp4 SP4 ENSDARG00000005186 1 Not determined 3
synpr SYPL2 ENSDARG00000044278 None Not determined 2
sypl2a SYPL2 ENSDARG00000055307 2 Not determined 2
sypl2b SYPL2 ENSDARG00000000690 3 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • FAM179A
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