GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
BTNL2 BTNL2 ENSDARG00000093039 1 Not determined 18
jak2a JAK2 ENSDARG00000007915 2 Not determined 8
jak2b JAK2 ENSDARG00000018882 5 Not determined 8
LOC559878 USP12 ENSDARG00000074367 None Not determined 2
si:dkey-31f5.1 SLC26A3 ENSDARG00000003615 2 Not determined 2
slc26a3 SLC26A3 ENSDARG00000007371 None Not determined 2
usp12a USP12 ENSDARG00000078109 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • FCGR2A
  • HLA
  • INSL4
  • INSL6
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