GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
atxn1a ATXN1 ENSDARG00000061687 1 Not determined 3
atxn1b ATXN1 ENSDARG00000060862 None Not determined 3
b4galt5 B4GALT6 ENSDARG00000037815 None Not determined 1
b4galt6 B4GALT6 ENSDARG00000010301 4 Not determined 1
disc1 DISC1 ENSDARG00000021895 8 Not determined 5
kifap3 KIFAP3 ENSDARG00000006862 1 Not determined 1
LOC100332567 EFEMP1 ENSDARG00000059121 None Not determined 8
LOC560627 NT5C1A ENSDARG00000086627 1 Not determined 1
LOC799449 NT5C1A ENSDARG00000070590 1 Not determined 1
nt5c1ba NT5C1A ENSDARG00000018153 1 Not determined 1
nt5c1bb NT5C1A ENSDARG00000033742 3 Not determined 1
pabpc1l RBMS1 ENSDARG00000002597 3 Not determined 3
RBMS1 (2 of 2) RBMS1 ENSDARG00000057768 2 Not determined 3
rbms1a RBMS1 ENSDARG00000074023 None Not determined 3
sema6a SEMA6A ENSDARG00000043028 6 Not determined 2
si:ch211-247h9.1 CNTN4 ENSDARG00000062880 2 Not determined 6
si:ch211-260g14.4 SELL ENSDARG00000042138 5 Not determined 1
si:ch211-260g14.8 SELL ENSDARG00000009123 4 Not determined 1
si:dkey-250m6.8 EFEMP1 ENSDARG00000070996 None Not determined 8
si:dkey-255n2.1 NT5C1A ENSDARG00000035883 None Not determined 1
SLC39A11 SLC39A11 ENSDARG00000089127 None Not determined 4
zgc:101095 KIFAP3 ENSDARG00000008639 1 Not determined 1
zgc:153573 CNTN4 ENSDARG00000019405 None Not determined 6

The following reported genes could not be linked automatically to a zebrafish gene:

  • CSNK1G3
  • SCN7A
  • ZNF746
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