GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoeb APOE ENSDARG00000040295 1 Not determined 42
arhgap15 ARHGAP15 ENSDARG00000062349 1 Not determined 1
cacnb2a CACNB2 ENSDARG00000079906 1 Not determined 8
cacnb2b CACNB2 ENSDARG00000055565 3 Not determined 8
col4a3bp COL4A3BP ENSDARG00000024325 5 Not determined 1
COL4A3BP (1 of 2) COL4A3BP ENSDARG00000063542 1 Not determined 1
fkbp1aa FKBP1B ENSDARG00000022684 None Not determined 1
fkbp1ab FKBP1B ENSDARG00000033567 None Not determined 1
fkbp1b FKBP1B ENSDARG00000052625 None Not determined 1
fkbp4 FKBP4 ENSDARG00000008447 None Not determined 1
hmgcra HMGCR ENSDARG00000052734 4 Not determined 9
hmgcrb HMGCR ENSDARG00000059301 None Not determined 9
si:dkey-21n8.1 SDK1 ENSDARG00000078866 12 Normal 2
si:dkey-255g15.1 ADARB2 ENSDARG00000071823 1 Not determined 3
si:rp71-86k19.1 SDK1 ENSDARG00000062854 11 Not determined 2
tomm40 TOMM40 ENSDARG00000092112 1 Not determined 23
tomm40l TOMM40 ENSDARG00000036721 None Not determined 23
trim24 TRIM24 ENSDARG00000028842 2 Not determined 1
ube3c UBE3C ENSDARG00000035978 2 Not determined 2
zgc:110064 APOE ENSDARG00000086370 1 Not determined 42
zgc:110585 SCHIP1 ENSDARG00000035175 None Not determined 3
zgc:114034 BLOC1S3 ENSDARG00000068828 None Not determined 1
zgc:153615 SCHIP1 ENSDARG00000038981 None Not determined 3
zgc:153912 MGAT1 ENSDARG00000036065 None Not determined 3
zgc:172265 ITGA8 ENSDARG00000078717 9 Not determined 2
zgc:66030 MGAT1 ENSDARG00000012407 2 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • APOC1
  • APOC1
  • APOC1
  • APOC2
  • APOC2
  • APOC2
  • APOC4
  • APOC4
  • APOC4
  • C9ORF156
  • CUBN
  • ENSG00000118975
  • ENSG00000173957
  • FLJ21945
  • HEMGN
  • MGC2650
  • MGC2650
  • SPPL3
  • UBXD4
  • XTP7
  • XTP7
Short-link