GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abcc4 ABCC4 ENSDARG00000058953 3 Not determined 4
col1a1a COL1A1 ENSDARG00000012405 2 Normal 1
col1a1b COL1A1 ENSDARG00000035809 3 Not determined 1
ctdspla CTDSPL ENSDARG00000071673 1 Not determined 1
ctdsplb CTDSPL ENSDARG00000062116 1 Not determined 1
FBN1 (1 of 2) FBN1 ENSDARG00000040013 1 Not determined 2
fbn2a FBN1 ENSDARG00000051896 13 Not determined 2
grik1a GRIK1 ENSDARG00000069139 None Not determined 6
hapln1a HAPLN1 ENSDARG00000089769 None Not determined 3
hapln1b HAPLN1 ENSDARG00000068516 3 Not determined 3
LOC561540 GRIK1 ENSDARG00000040627 5 Not determined 6
si:ch73-34a12.4 FBN1 ENSDARG00000088379 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • PKHD1
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