GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
capsla CAPSL ENSDARG00000039341 None Not determined 1
capslb CAPSL ENSDARG00000003414 1 Not determined 1
cd226 CD226 ENSDARG00000045391 1 Not determined 5
erbb3a ERBB3 ENSDARG00000006202 1 Not determined 8
erbb3b ERBB3 ENSDARG00000036993 7 Not determined 8
ifih1 IFIH1 ENSDARG00000018553 1 Not determined 7
il7r IL7R ENSDARG00000078970 None Not determined 7
ins INS ENSDARG00000035350 None Not determined 5
insb INS ENSDARG00000034610 None Not determined 5
ptpn22 PTPN22 ENSDARG00000075062 5 Not determined 17
ptpn2a PTPN2 ENSDARG00000016481 4 Not determined 13
ptpn2b PTPN2 ENSDARG00000035986 2 Not determined 13
si:dkey-19j7.2 AFF3 ENSDARG00000079575 11 Not determined 3
zgc:175264 PHTF1 ENSDARG00000057708 4 Not determined 3

The following reported genes could not be linked automatically to a zebrafish gene:

  • C12orf30
  • KIAA0350
  • LOC150577
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