ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__13 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-250C4
alt_ctg13_2_1
zC250C4
EPN details
AL935288.9
finished
2 CH211-160I12
alt_ctg13_2_1
zC160I12
EPN details
AL935298.5
finished
3 CH211-243F3
alt_ctg13_2_1
zC243F3
EPN details
BX248102.11
finished
  GAP (type-3) length unknown    
5 CH211-93N23
alt_ctg13_2_2
zC93N23
EPN details
BX004962.10
finished
6 CH211-193J5
alt_ctg13_2_2
zC193J5
EPN details
CR352233.9
finished
7 CH73-105B23
alt_ctg13_2_2
zH105B23
EPN details
CU570977.8
finished
  GAP (type-3) length unknown    
9 CH211-233A24
alt_ctg13_2_3
zC233A24
EPN details
CT573111.9
finished
10 RP71-77D7
alt_ctg13_2_3
bZ77D7
EPN details
BX119973.7
finished
11 DKEY-32H6
alt_ctg13_2_3
zK32H6
EPN details
CR762461.7
finished
12 DKEY-181A13
alt_ctg13_2_3
zK181A13
EPN details
CR559942.5
finished
  GAP (type-3) length unknown    
14 CH211-155K1
alt_ctg13_2_4
zC155K1
EPN details
AL929492.6
finished
15 DKEY-170I22
alt_ctg13_2_4
zK170I22
EPN details
CT025874.7
finished
  GAP (type-3) length unknown    
17 CH211-1N9
alt_ctg13_2_5
zC1N9
EPN details
BX530068.35
finished
18 CH211-180B2
alt_ctg13_2_5
zC180B2
EPN details
AL935136.4
finished
19 DKEY-226B20
alt_ctg13_2_5
zK226B20
EPN details
BX546482.15
finished
  GAP (type-3) length unknown    
21 CH211-62A1
alt_ctg13_2_6
zC62A1
EPN details
BX914200.14
finished
22 CH211-51N3
alt_ctg13_2_6
CONTAINER
zC51N3
EPN details
BX936305.18
finished
23 DKEY-175H14
alt_ctg13_2_6
CONTAINED
zK175H14
EPN details
BX914217.19
finished
22 CH211-51N3
alt_ctg13_2_6
CONTAINER
zC51N3
EPN details
BX936305.18
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 94206 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935288.9 1 94206 +
94207 250117 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 AL935298.5 1 155911 +
250118 338818 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX248102.11 1 88701 -
338819 388818 4 N 50000 contig no
388819 492455 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX004962.10 67100 170736 -
492456 634915 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CR352233.9 7440 149899 +
634916 713583 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU570977.8 35447 114114 +
713584 763583 8 N 50000 contig no
763584 783472 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CT573111.9 1 19889 +
783473 965539 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX119973.7 1 182067 -
965540 1049950 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR762461.7 1 84411 -
1049951 1061137 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR559942.5 1 11187 -
1061138 1111137 13 N 50000 contig no
1111138 1268199 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AL929492.6 1 157062 -
1268200 1355510 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 CT025874.7 1 87311 -
1355511 1405510 16 N 50000 contig no
1405511 1563903 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX530068.35 1 158393 +
1563904 1710615 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 AL935136.4 1 146712 +
1710616 1783418 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 19 BX546482.15 134147 206949 +
1783419 1833418 20 N 50000 contig no
1833419 2003601 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX914200.14 1 170183 +
2003602 2003602 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX936305.18 144914 144914 -
2003603 2137583 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX914217.19 1 133981 +
2137584 2140747 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 24 BX936305.18 1 3164 -

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-250C4
alt_ctg13_2_1
zC250C4
-
-
AL935288.9
finished
181644 CHORI-211 3' / 5'
94206 / 1
- / -
87438
0
Identified
2017-03-07
agp2oracle
humpub
 
2 CH211-160I12
alt_ctg13_2_1
zC160I12
-
-
AL935298.5
finished
155911 CHORI-211 3' / 3'
155911 / 88701
- / -
61772
0
Identified
2017-03-07
agp2oracle
humpub
 
3 CH211-243F3
alt_ctg13_2_1
zC243F3
-
-
BX248102.11
finished
150473 CHORI-211        
  GAP (type-3) length unknown                  
5 CH211-93N23
alt_ctg13_2_2
zC93N23
-
-
BX004962.10
finished
170736 CHORI-211 5' / 5'
67100 / 7440
- / -
74538
0
Identified
2017-03-07
agp2oracle
humpub
 
6 CH211-193J5
alt_ctg13_2_2
zC193J5
-
-
CR352233.9
finished
149899 CHORI-211 3' / 5'
149899 / 35447
- / -
35446
0
Identified
2017-03-07
agp2oracle
humpub
 
7 CH73-105B23
alt_ctg13_2_2
zH105B23
-
-
CU570977.8
finished
114114 CHORI-73        
  GAP (type-3) length unknown                  
9 CH211-233A24
alt_ctg13_2_3
zC233A24
-
-
CT573111.9
finished
77487 CHORI-211 3' / 3'
19889 / 182067
- / -
57604
0
Identified
2017-03-07
agp2oracle
humpub
 
10 RP71-77D7
alt_ctg13_2_3
bZ77D7
-
-
BX119973.7
finished
182073 RPCI-71 5' / 3'
1 / 84411
- / -
2000
0
Identified
2017-03-07
agp2oracle
humpub
 
11 DKEY-32H6
alt_ctg13_2_3
zK32H6
-
-
CR762461.7
finished
86411 DanioKey 5' / 3'
1 / 11187
- / -
10453
0
Identified
2017-03-07
agp2oracle
humpub
 
12 DKEY-181A13
alt_ctg13_2_3
zK181A13
-
-
CR559942.5
finished
21640 DanioKey        
  GAP (type-3) length unknown                  
14 CH211-155K1
alt_ctg13_2_4
zC155K1
-
-
AL929492.6
finished
157062 CHORI-211 5' / 3'
1 / 87311
- / -
14534
0
Identified
2017-03-07
agp2oracle
humpub
 
15 DKEY-170I22
alt_ctg13_2_4
zK170I22
-
-
CT025874.7
finished
101845 DanioKey        
  GAP (type-3) length unknown                  
17 CH211-1N9
alt_ctg13_2_5
zC1N9
-
-
BX530068.35
finished
185626 CHORI-211 3' / 5'
158393 / 1
- / -
27233
0
Identified
2017-03-07
agp2oracle
humpub
 
18 CH211-180B2
alt_ctg13_2_5
zC180B2
-
-
AL935136.4
finished
146712 CHORI-211 3' / 5'
146712 / 134147
- / -
134146
0
Identified
2017-03-07
agp2oracle
humpub
 
19 DKEY-226B20
alt_ctg13_2_5
zK226B20
-
-
BX546482.15
finished
206949 DanioKey        
  GAP (type-3) length unknown                  
21 CH211-62A1
alt_ctg13_2_6
zC62A1
-
-
BX914200.14
finished
170183 CHORI-211 3' / 3'
170183 / 144914
- / -
5469
0
Identified
2018-01-16
agp2oracle
humpub
 
22 CH211-51N3
alt_ctg13_2_6
CONTAINER
zC51N3
-
-
BX936305.18
finished
150383 CHORI-211 5' / 5'
144914 / 1
- / -
133981
0
Identified
2017-03-07
agp2oracle
humpub
 
23 DKEY-175H14
alt_ctg13_2_6
CONTAINED
zK175H14
-
-
BX914217.19
finished
133981 DanioKey 3' / 3'
133981 / 3164
- / -
133981
0
Identified
2017-03-07
agp2oracle
humpub
 
22 CH211-51N3
alt_ctg13_2_6
CONTAINER
zC51N3
-
-
BX936305.18
finished
150383 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
655,546
Total finished length of fin clones w/ overlap
2,543,129
Total finished length of fin clones w/o overlap
1,887,583
Total overlap length of fin+unfin clones
655,546
Total finished length of fin+unfin clones w/ overlap
2,543,129
Total finished length of fin+unfin clones w/o overlap
1,887,583

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