ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_1__22 (TPF updated: 2018-01-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-236E20
alt_ctg22_1_1
zK236E20
CR936460.7
finished
2 CH211-81L19
alt_ctg22_1_1
zC81L19
CU074309.8
finished
3 RP71-69P9
alt_ctg22_1_1
bZ69P9
BX322595.8
finished
  GAP (type-3) length unknown    
5 DKEYP-70F9
alt_ctg22_1_2
zKp70F9
BX323550.13
finished
6 CH211-171D11
alt_ctg22_1_2
zC171D11
AL935146.13
finished
7 DKEY-192M14
alt_ctg22_1_2
zK192M14
BX908392.13
finished
  GAP (type-3) length unknown    
9 CH73-264B7
alt_ctg22_1_3
zH264B7
CR936359.9
finished
10 DKEY-121A11
alt_ctg22_1_3
CONTAINER
zK121A11
BX465190.4
finished
11 DKEY-39A4
alt_ctg22_1_3
CONTAINED
zK39A4
BX957240.10
finished
10 DKEY-121A11
alt_ctg22_1_3
CONTAINER
zK121A11
BX465190.4
finished
  GAP (type-3) length unknown    
13 DKEY-21E2
alt_ctg22_1_4
CONTAINER
zK21E2
BX927243.9
finished
14 DKEY-77M18
alt_ctg22_1_4
CONTAINED
zK77M18
BX664624.5
finished
13 DKEY-21E2
alt_ctg22_1_4
CONTAINER
zK21E2
BX927243.9
finished
  GAP (type-3) length unknown    
16 DKEY-3E17
alt_ctg22_1_5
zK3E17
CR391993.14
finished
17 DKEYP-93A3
alt_ctg22_1_5
zKp93A3
BX511219.7
finished
18 CH211-202D4
alt_ctg22_1_5
zC202D4
BX510913.9
finished
  GAP (type-3) length unknown    
20 CH211-125A22
alt_ctg22_1_6
zC125A22
AL929135.9
finished
21 CH211-195B2
alt_ctg22_1_6
zC195B2
BX255931.5
finished
22 DKEY-268M13
alt_ctg22_1_6
zK268M13
BX293565.25
finished
23 CH73-289G9
alt_ctg22_1_6
zH289G9
FO704670.2
contiguous
  GAP (type-3) length unknown    
25 DKEY-94N12
alt_ctg22_1_7
zK94N12
BX470234.8
finished
26 DKEY-30G10
alt_ctg22_1_7
zK30G10
BX664629.10
finished
27 CH211-206A19
alt_ctg22_1_7
zC206A19
BX569795.5
finished
  GAP (type-3) length unknown    
29 DKEY-42P8
alt_ctg22_1_8
zK42P8
AL953843.6
finished
30 CH211-195N20
alt_ctg22_1_8
zC195N20
BX901926.19
finished
31 CH211-207C7
alt_ctg22_1_8
zC207C7
BX649295.47
finished
  GAP (type-3) length unknown    
33 CH211-129C21
alt_ctg22_1_9
zC129C21
BX005201.7
finished
34 CH211-198E14
alt_ctg22_1_9
zC198E14
AL935286.14
finished
35 DKEY-101H20
alt_ctg22_1_9
zK101H20
BX957261.10
finished
  GAP (type-3) length unknown    
37 DKEY-114D20
alt_ctg22_1_10
zK114D20
CR388178.5
finished
38 DKEY-33L16
alt_ctg22_1_10
zK33L16
CR628370.28
finished
39 DKEY-156I20
alt_ctg22_1_10
zK156I20
CU463157.4
finished
40 CH211-217A1
alt_ctg22_1_10
zC217A1
AL954702.9
finished
41 CH211-130L20
alt_ctg22_1_10
zC130L20
CR318670.8
finished
  GAP (type-3) length unknown    
43 RP71-23D18
alt_ctg22_1_11
bZ23D18
BX539332.13
finished
44 CH211-278E17
alt_ctg22_1_11
zC278E17
BX248330.6
finished
45 DKEY-4C23
alt_ctg22_1_11
zK4C23
AL929032.10
finished
  GAP (type-3) length unknown    
47 CH211-226H8
alt_ctg22_1_12
CONTAINER
zC226H8
BX950205.10
finished
48 CH73-240C14
alt_ctg22_1_12
CONTAINED
zH240C14
CU463850.5
finished
47 CH211-226H8
alt_ctg22_1_12
CONTAINER
zC226H8
BX950205.10
finished
  GAP (type-3) length unknown    
50 CH73-189N23
alt_ctg22_1_13
zH189N23
CT827860.3
finished
51 DKEY-240E12
alt_ctg22_1_13
zK240E12
BX571958.11
finished
52 CH211-12H2
alt_ctg22_1_13
zC12H2
CR769772.26
finished
  GAP (type-3) length unknown    
54 CH211-250E5
alt_ctg22_1_14
zC250E5
AL929192.17
finished
55 CH211-14C11
alt_ctg22_1_14
zC14C11
BX640467.12
finished
56 CH211-14G12
alt_ctg22_1_14
zC14G12
AL845363.5
finished
  GAP (type-3) length unknown    
58 CH211-140F21
alt_ctg22_1_15
zC140F21
BX649330.5
finished
59 DKEY-75L1
alt_ctg22_1_15
zK75L1
BX248416.3
finished
60 DKEYP-101G1
alt_ctg22_1_15
zKp101G1
BX649315.28
finished
  GAP (type-3) length unknown    
62 DKEY-44G23
alt_ctg22_1_16
zK44G23
AL953841.5
finished
63 DKEY-101P20
alt_ctg22_1_16
zK101P20
BX901976.22
finished
64 DKEY-1H1
alt_ctg22_1_16
zK1H1
BX901977.10
finished
  GAP (type-3) length unknown    
66 CH211-153C2
alt_ctg22_1_17
zC153C2
CR293514.9
finished
67 DKEYP-26H11
alt_ctg22_1_17
zKp26H11
CR384108.7
finished
68 CH211-268I19
alt_ctg22_1_17
zC268I19
CR547131.7
finished
  GAP (type-3) length unknown    
70 DKEY-21O6
alt_ctg22_1_18
zK21O6
BX649488.9
finished
71 CH211-213C4
alt_ctg22_1_18
zC213C4
BX649245.16
finished
  GAP (type-3) length unknown    
73 DKEYP-34C12
alt_ctg22_1_19
CONTAINER
zKp34C12
BX321898.29
finished
74 CH211-151I8
alt_ctg22_1_19
CONTAINED
zC151I8
CR847808.6
finished
73 DKEYP-34C12
alt_ctg22_1_19
CONTAINER
zKp34C12
BX321898.29
finished
  GAP (type-3) length unknown    
76 DKEY-205O12
alt_ctg22_1_20
zK205O12
BX571961.11
finished
77 DKEY-232H18
alt_ctg22_1_20
zK232H18
BX571946.9
finished
78 DKEY-261D11
alt_ctg22_1_20
zK261D11
BX927116.18
finished
  GAP (type-3) length unknown    
80 DKEYP-92A5
alt_ctg22_1_21
zKp92A5
BX649256.12
finished
81 CH211-128N21
alt_ctg22_1_21
zC128N21
AL772158.6
finished
82 CH211-197I12
alt_ctg22_1_21
zC197I12
CR450802.8
finished
  GAP (type-3) length unknown    
84 CH211-194K1
alt_ctg22_1_22
zC194K1
BX649360.12
finished
85 DKEY-262O11
alt_ctg22_1_22
zK262O11
BX908764.11
finished
86 DKEY-286J15
alt_ctg22_1_22
zK286J15
AL845330.16
finished
  GAP (type-3) length unknown    
88 DKEY-169I5
alt_ctg22_1_23
zK169I5
BX649448.10
finished
89 DKEY-30A6
alt_ctg22_1_23
zK30A6
BX000465.12
finished
90 DKEY-42L16
alt_ctg22_1_23
zK42L16
BX324215.15
finished
  GAP (type-3) length unknown    
92 DKEY-49N23
alt_ctg22_1_24
CONTAINER
zK49N23
AL831726.11
finished
93 CH211-142P8
alt_ctg22_1_24
CONTAINED
zC142P8
BX927094.13
finished
92 DKEY-49N23
alt_ctg22_1_24
CONTAINER
zK49N23
AL831726.11
finished
94 CH211-165I22
alt_ctg22_1_24
zC165I22
AL929509.15
finished
95 CH211-257F16
alt_ctg22_1_24
zC257F16
BX537350.25
finished
  GAP (type-3) length unknown    
97 CH73-167F18
alt_ctg22_1_25
CONTAINER
zH167F18
CU856621.10
finished
98 DKEY-9N18
alt_ctg22_1_25
CONTAINED
zK9N18
CU462880.8
finished
97 CH73-167F18
alt_ctg22_1_25
CONTAINER
zH167F18
CU856621.10
finished
  GAP (type-3) length unknown    
100 DKEY-166N5
alt_ctg22_1_26
zK166N5
CR407592.10
finished
101 CH73-111B21
alt_ctg22_1_26
zH111B21
CR927479.22
finished
102 CH211-147P18
alt_ctg22_1_26
zC147P18
CR394563.19
finished
  GAP (type-3) length unknown    
104 CH73-40M17
alt_ctg22_1_27
zH40M17
CT009727.7
finished
105 CH211-271K12
alt_ctg22_1_27
zC271K12
BX897656.9
finished
106 CH211-208M13
alt_ctg22_1_27
zC208M13
CR405690.6
finished
  GAP (type-3) length unknown    
108 DKEY-37M8
alt_ctg22_1_28
zK37M8
BX005105.6
finished
109 DKEY-211E20
alt_ctg22_1_28
zK211E20
CU137686.6
finished
110
alt_ctg22_1_28
CABZ01076803
CABZ01076803.1
finished
  GAP (type-3) length unknown    
112 CH73-80N6
alt_ctg22_1_29
zH80N6
CT954258.5
finished
113 DKEY-66O5
alt_ctg22_1_29
zK66O5
CR759791.15
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 88543 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR936460.7 50678 139220 -
88544 244049 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU074309.8 1 155506 +
244050 284502 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX322595.8 107008 147460 +
284503 334502 4 N 50000 contig no
334503 467552 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX323550.13 66982 200031 -
467553 628713 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL935146.13 1 161161 -
628714 722402 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX908392.13 1 93689 -
722403 772402 8 N 50000 contig no
772403 886582 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CR936359.9 1 114180 -
886583 886583 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX465190.4 107312 107312 -
886584 994966 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX957240.10 1 108383 -
994967 1039435 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 BX465190.4 1 44469 -
1039436 1089435 13 N 50000 contig no
1089436 1193274 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX927243.9 1 103839 +
1193275 1233908 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX664624.5 14185 54818 -
1233909 1313533 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 BX927243.9 147379 227003 +
1313534 1363533 17 N 50000 contig no
1363534 1486184 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CR391993.14 1 122651 -
1486185 1686065 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX511219.7 1 199881 -
1686066 1876573 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 BX510913.9 1 190508 -
1876574 1926573 21 N 50000 contig no
1926574 1947602 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 AL929135.9 146503 167531 -
1947603 2136706 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX255931.5 224 189327 +
2136707 2295636 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 BX293565.25 2001 160930 +
2295637 2353018 25 A FO704670.2 51296 108677 +
2353019 2403018 26 N 50000 contig no
2403019 2469722 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX470234.8 83238 149941 -
2469723 2726159 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX664629.10 1 256437 +
2726160 2774523 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 29 BX569795.5 1 48364 -
2774524 2824523 30 N 50000 contig no
2824524 2933374 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 AL953843.6 103725 212575 -
2933375 3138173 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 BX901926.19 1 204799 -
3138174 3138267 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 33 BX649295.47 88386 88479 +
3138268 3188267 34 N 50000 contig no
3188268 3299803 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX005201.7 72964 184499 -
3299804 3511100 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 AL935286.14 1 211297 -
3511101 3553239 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX957261.10 1 42139 -
3553240 3603239 38 N 50000 contig no
3603240 3690351 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 43 CR388178.5 1 87112 +
3690352 3881318 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 43 CR628370.28 1 190967 +
3881319 3986618 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 43 CU463157.4 2001 107300 +
3986619 4163016 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 43 AL954702.9 1 176398 -
4163017 4174583 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 43 CR318670.8 10586 22152 +
4174584 4224583 44 N 50000 contig no
4224584 4289726 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 BX539332.13 1 65143 +
4289727 4479606 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 BX248330.6 1 189880 +
4479607 4609467 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 47 AL929032.10 106915 236775 +
4609468 4659467 48 N 50000 contig no
4659468 4814679 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 BX950205.10 1 155212 +
4814680 4817319 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 CU463850.5 27835 30474 +
4817320 4857854 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 51 BX950205.10 157845 198379 +
4857855 4907854 52 N 50000 contig no
4907855 4913285 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 CT827860.3 1 5431 +
4913286 5134677 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 BX571958.11 1 221392 -
5134678 5170104 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 55 CR769772.26 177519 212945 +
5170105 5220104 56 N 50000 contig no
5220105 5221399 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 59 AL929192.17 1 1295 +
5221400 5301377 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 59 BX640467.12 1 79978 -
5301378 5421843 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 59 AL845363.5 41758 162223 +
5421844 5471843 60 N 50000 contig no
5471844 5561841 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX649330.5 1 89998 +
5561842 5706836 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX248416.3 10754 155748 +
5706837 5752336 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX649315.28 21509 67008 +
5752337 5802336 64 N 50000 contig no
5802337 5846618 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 AL953841.5 1 44282 +
5846619 6048546 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX901976.22 1 201928 +
6048547 6107009 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX901977.10 28495 86957 +
6107010 6157009 68 N 50000 contig no
6157010 6320866 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR293514.9 1 163857 +
6320867 6488675 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR384108.7 16 167824 +
6488676 6593318 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR547131.7 2001 106643 +
6593319 6643318 72 N 50000 contig no
6643319 6826548 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 74 BX649488.9 1 183230 +
6826549 7025639 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 74 BX649245.16 2001 201091 +
7025640 7075639 75 N 50000 contig no
7075640 7120569 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 78 BX321898.29 1 44930 +
7120570 7262132 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 78 CR847808.6 6432 147994 -
7262133 7273361 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 78 BX321898.29 183814 195042 +
7273362 7323361 79 N 50000 contig no
7323362 7380310 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 82 BX571961.11 92530 149478 -
7380311 7560106 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 82 BX571946.9 1 179796 +
7560107 7678375 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 82 BX927116.18 37540 155808 +
7678376 7728375 83 N 50000 contig no
7728376 7749975 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 86 BX649256.12 1 21600 +
7749976 7928021 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 86 AL772158.6 1 178046 -
7928022 8042269 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 86 CR450802.8 72661 186908 +
8042270 8092269 87 N 50000 contig no
8092270 8106995 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 90 BX649360.12 1 14726 +
8106996 8237225 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 90 BX908764.11 1 130230 +
8237226 8338114 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 90 AL845330.16 1 100889 -
8338115 8388114 91 N 50000 contig no
8388115 8570626 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 94 BX649448.10 1 182512 +
8570627 8785625 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 94 BX000465.12 1 214999 +
8785626 8788206 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 94 BX324215.15 79442 82022 +
8788207 8838206 95 N 50000 contig no
8838207 8968548 96 FClick to retrieve finished assembled sequence in green bar: rank(s) 96 - 100 AL831726.11 115356 245697 -
8968549 9045691 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 96 - 100 BX927094.13 1 77143 +
9045692 9047694 98 FClick to retrieve finished assembled sequence in green bar: rank(s) 96 - 100 AL831726.11 31022 33024 -
9047695 9187322 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 96 - 100 AL929509.15 1 139628 -
9187323 9317131 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 96 - 100 BX537350.25 1 129809 -
9317132 9367131 101 N 50000 contig no
9367132 9386366 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 104 CU856621.10 1 19235 +
9386367 9442028 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 104 CU462880.8 1 55662 -
9442029 9461510 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 104 CU856621.10 75610 95091 +
9461511 9511510 105 N 50000 contig no
9511511 9538798 106 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 108 CR407592.10 120012 147299 -
9538799 9670278 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 108 CR927479.22 1 131480 -
9670279 9723521 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 108 CR394563.19 15437 68679 +
9723522 9773521 109 N 50000 contig no
9773522 9778423 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 110 - 112 CT009727.7 14637 19538 -
9778424 9920193 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 110 - 112 BX897656.9 71 141840 -
9920194 9985310 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 110 - 112 CR405690.6 130436 195552 +
9985311 10035310 113 N 50000 contig no
10035311 10143227 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 116 BX005105.6 63487 171403 -
10143228 10245561 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 116 CU137686.6 34476 136809 -
10245562 10279229 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 116 CABZ01076803.1 1 33668 -
10279230 10329229 117 N 50000 contig no
10329230 10424028 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 119 CT954258.5 1 94799 +
10424029 10462999 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 119 CR759791.15 1 38971 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
28
Gap types
type-3
28
Total clones
85
Clone HTGS Phases
contiguous
1
finished
84
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
3,565,145
Total finished length of fin clones w/ overlap
12,491,886
Total finished length of fin clones w/o overlap
8,926,741
Total overlap length of fin+unfin clones
3,616,440
Total finished length of fin+unfin clones w/ overlap
12,600,563
Total finished length of fin+unfin clones w/o overlap
8,984,123

Dovetails

Help

# rank accession status length date
1 113 CR759791 unfinished 59,871 Tue, 16 Jan 2018 10:36

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