A software application for rapidly extracting SNPs from a multi-FASTA alignment.
Download and Installation
Please see our GitHub page for download and installation instructions.
Learn and Support
For more information and advice on using this software please see our GitHub page.
License and Citation
SNP-sites is available under GPL3.
If you make use of this software in your research, please cite as:
"SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments", Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris, Microbial Genomics 2(4), (2016)
If you need help or have any queries, please contact us using the details below.
The Pathogen Informatics team develop and maintain software applications and systems to support the research activities of the pathogen group. We develop and maintain scalable and robust automated tools for sequence and annotation tracking and analysis and provide ad-hoc informatics support and training to the researchers in the pathogen group.
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments.