Snoopy

Snoopy

Snoopy

Overview

Snoopy is a browser-based quality control tool that allows the user to quickly visually review many batches of predicted variants from sequence files (BAM/CRAM). The steps of usage are:

  1. Construct a json file to list your sequence files (locally, HTTP/S, or SSH) and a set of variants sites
  2. Start snoopy from the command line
  3. In the browser load the json file
  4. Click 'variant', 'not variant', 'uncertain' at each predicted variant site
  5. Save the results which includes your decisions and a snapshot of each location

Download and Installation

Snoopy requires python (2 or 3) and pip. To install:pip install snoopy

Learn and Support

For more information see:

License and Citation

GNU GENERAL PUBLIC LICENSE Version 3

Authors

Sanger Contributors

Rice, Dan

picture-dr9.jpg
Dan Rice
Senior Software Developer